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Bacterial genomics

Development of a multiplex ddPCR assay for simultaneous absolute quantification of bacterial, fungal, and human DNA

Guohong Huang, Torrey L. Gallagher, Gregory J. Tsongalis, Joel A. Lefferts

published 20 Feb 2026

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Genomic and chemical insights into a human lectin-binding extracellular polysaccharides from Parageobacillus toebii strain H-70

Diana Ghevondyan, Armine Margaryan, Fabrizio Chiodo, Yvette van Kooyk, Ilaria Finore, Annarita Poli, Hovik Panosyan

published 08 Jan 2026

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Whole-genome sequencing of Burkholderia glumae strains from Thailand reveals potential horizontal gene transfer with Burkholderia pseudomallei

Sujin Patarapuwadol, Woranich Hintong, Pornpavee Nualnisachol, Natnicha Wankaew, Worarat Kruasuwan, Thanchanok Sawaengwong, Phatcharin Laosena, Jiraphan Premsuriya

published 31 Dec 2025

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Candidate orphan genes: Reassessing uniqueness

Sheetalpreet K. Maan, Xuan Y. Butzin, Steven X. Ge, Nicholas C. Butzin

published 31 Dec 2025

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Systematic analysis of spontaneous tandem genome amplification events in Yersinia pestis

Dmitry N. Konanov, Olga N. Liubimova, Alexander V. Kovrizhnikov, Ignat V. Sonets, Alina N. Balykova, Alexandra V. Lukina-Gronskaya, Anna S. Speranskaya, Danil V. Krivonos, Galina A. Eroshenko, Elena N. Ilina, Vadim M. Govorun, Vladimir V. Kutyrev

published 31 Dec 2025

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Transformation of Tn7 insertion elements across strains of Vibrio fischeri

Andrew G. Cecere, Chris Muriel-Mundo, Derek J. Fisher, Tim I. Miyashiro

published 30 Dec 2025

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Centriflaken: An automated data analysis pipeline for assembly and in silico analyses of foodborne pathogens from metagenomic samples

Kranti Konganti, Julie A. Kase, Narjol Gonzalez-Escalona

published 23 Dec 2025

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Whole-genome analysis of Lysinibacillus boronitolerans MSR1: A dairy-isolated multidrug-resistant and non-pathogenic strain

Md. Shahedur Rahman, Md. Tofidul Islam, Mahadi Hasan, Md. Tariquzzaman, Nure Sharaf Nower Samia, Md. Mahfuzur Rahman, Mustafizur Rahman

published 12 Dec 2025

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DOGMA: de novo assembly of densely labelled optical DNA maps using a matrix profile approach

Albertas Dvirnas, Luis Mario Leal-Garza, Zahra Abbaspour, Erik Fröbrant, Karolin Frykholm, Marie Wrande, Linus Sandegren, Fredrik Westerlund, Tobias Ambjörnsson

published 01 Dec 2025

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Whole genome sequencing, characterization and analysis of coronene degrading bacterial strain Halomonas elongata

Thasneema Rafic, Mohammed Alarawi, Omer Salem Alkhnbashi, Assad Al-Thukair, Ajibola H. Okeyode, Karthikeyan G, Alexis Nzila

published 19 Nov 2025

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Silent spread of mcr-9 in ESBL-producing Enterobacteriaceae clinical isolates, Jimma, Ethiopia

Tsegaye Sewunet, Mohammad Razavi, Chaitanya Tellapragada, Christian G. Giske

published 18 Nov 2025

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ReadSeeker: A DNABERT based de-novo read-level gene predictor

Ben Wulf, Piotr Wojciech Dabrowski

published 13 Nov 2025

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Genomic characteristics of Lacticaseibacillus rhamnosus strains isolated from blood

Piotr Jarocki, Jan Sadurski, Martyna Siuda, Mateusz Romanowicz, Jacek Panek, Magdalena Frąc, Adam Waśko

published 31 Oct 2025

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