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Bacterial genomics

Parallel engineering of environmental bacteria and performance over years under jungle-simulated conditions

Yonatan Chemla, Yuval Dorfan, [ ... ], Christopher A. Voigt

Optimized conditions for Listeria, Salmonella and Escherichia whole genome sequencing using the Illumina iSeq100 platform with point-and-click bioinformatic analysis

Sonsiray Alvarez Narvaez, Zhenyu Shen, [ ... ], Susan Sanchez

Cas9-mediated endogenous plasmid loss in Borrelia burgdorferi

Constantin N. Takacs, Yuko Nakajima, James E. Haber, Christine Jacobs-Wagner

Throughput screening of Bacillus subtilis strains that abundantly secrete surfactin in vitro identifies effective probiotic candidates

Dongho Lee, Taehoon Oh, [ ... ], Yangrae Cho

Divergent gene expression responses in two Baltic Sea heterotrophic model bacteria to dinoflagellate dissolved organic matter

Christofer M. G. Osbeck, Daniel Lundin, [ ... ], Jarone Pinhassi

Identification of shared bacterial strains in the vaginal microbiota of related and unrelated reproductive-age mothers and daughters using genome-resolved metagenomics

Michael T. France, Sarah E. Brown, [ ... ], Jacques Ravel

Taxonomic revision of the genus Amphritea supported by genomic and in silico chemotaxonomic analyses, and the proposal of Aliamphritea gen. nov.

Ryota Yamano, Juanwen Yu, [ ... ], Tomoo Sawabe

Genome insights from the identification of a novel Pandoraea sputorum isolate and its characteristics

Rui-Fang Gao, Ying Wang, [ ... ], Gui-Ming Zhang

Measuring quality of DNA sequence data via degradation

Alan F. Karr, Jason Hauzel, Adam A. Porter, Marcel Schaefer

Atypical integrative element with strand-biased circularization activity assists interspecies antimicrobial resistance gene transfer from Vibrio alfacsensis

Lisa Nonaka, Michiaki Masuda, Hirokazu Yano

The dynamic network of IS30 transposition pathways

Ferenc Olasz, Mónika Szabó, [ ... ], János Kiss

A taxonomically representative strain collection to explore xenobiotic and secondary metabolism in bacteria

Evanthia Kontomina, Vasiliki Garefalaki, [ ... ], Sotiria Boukouvala

MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction

Jidong Lang

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