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Bacterial genomics

A trainable language model with potential to modulate translation rates in non-model organisms by generating upstream untranslated region sequence libraries

Alexander D. Duggan, Matthew P. Newman, David R. McMillen

Codon bias variation in Staphylococcus aureus

Kathleen O’Connor, Benjamin D. Mallinger, Nicholas A. Bedard, Robin Patel

Comparative prevalence of the mercury resistance gene merA in human feces, food, and environmental water from Japan, Vietnam, and Ghana

Yen Hai Le, Judith Dzifa Azumah, [ ... ], Yoshimasa Yamamoto

Development of a rapid comQ-targeted quantitative polymerase chain reaction assay for specific identification and quantification of Bacillus subtilis subsp. natto

Mayu Takizawa, Daisuke Kyoui, [ ... ], Naoki Narisawa

In silico antimicrobial resistance profiling of 1,240 Stenotrophomonas maltophilia genomes: AMR gene prevalence, temporal evolution, and ST-specific associations

Laith B. Alhusseini, Firas Nabeeh Jaafar, [ ... ], Mohammad Sholeh

An integrative multi-omics approach points to membrane composition as a key factor in E. coli persistence

Silvia J. Cañas-Duarte, Lei Sun, [ ... ], Silvia Restrepo

Genomic characterization of multidrug-resistant Escherichia coli isolated from gills of Labeo rohita: Insight into resistome, virulence and pathogenicity

Amit Kumar, Rahul Singh, [ ... ], Denekew Alemayehu Alamneh

Phenotypic and molecular characterization of K64 putative hypervirulent carbapenem-resistant Klebsiella pneumoniae

Chunhong Shao, Jian Bao, [ ... ], Meijie Jiang

Streptococcus didelphis infection in free-ranging white-eared opossum (Didelphis albiventris) and Brazilian common opossum (Didelphis aurita): pathology, microbiologic, and genomic characterization

Daniel Oliveira dos Santos, Yasmin Gonçalves de Castro, [ ... ], Renato Lima Santos

Direct LAMP for on-site rapid detection of Vibrio parahaemolyticus in shrimp (Litopenaeus vannamei) aquaculture water

Xiaodan Pu, Feng Lu, [ ... ], Xuzhi Zhang

Genome analysis of Lactiplantibacillus plantarum and Levilactobacillus brevis isolated from traditionally fermented Ethiopian kocho and their probiotic properties

Guesh Mulaw, Teklemichael Tesfay, [ ... ], Nirupama Narayanan

Single-tube two-step RPA-CRISPR/Cas12b platform for detection of Pseudomonas aeruginosa

Haotian Lin, Shichun Wang, [ ... ], Hongxing Zhang

Distribution and evolution of the LysR-type transcriptional regulators of the Salmonella genus

Dávila S., Rivera-Ramírez A., [ ... ], Hernández-Lucas I.

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