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Bacterial genomics

Characterization and Plasmid Elimination of NDM-1-Producing Acinetobacter calcoaceticus from China

Yang Sun, Qi Liu, [ ... ], Shuzhang Feng

Whole Genome Sequencing and Analysis of Plant Growth Promoting Bacteria Isolated from the Rhizosphere of Plantation Crops Coconut, Cocoa and Arecanut

Alka Gupta, Murali Gopal, [ ... ], Ravi Gupta

Comparative Analysis of Functional Metagenomic Annotation and the Mappability of Short Reads

Rogan Carr, Elhanan Borenstein

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

Charles F. A. de Bourcy, Iwijn De Vlaminck, [ ... ], Stephen R. Quake

CTAG-Containing Cleavage Site Profiling to Delineate Salmonella into Natural Clusters

Le Tang, Wei-Qiao Liu, [ ... ], Shu-Lin Liu

The Complete Genome Sequence of Escherichia coli EC958: A High Quality Reference Sequence for the Globally Disseminated Multidrug Resistant E. coli O25b:H4-ST131 Clone

Brian M. Forde, Nouri L. Ben Zakour, [ ... ], Scott A. Beatson

Mobility and Generation of Mosaic Non-Autonomous Transposons by Tn3-Derived Inverted-Repeat Miniature Elements (TIMEs)

Magdalena Szuplewska, Marta Ludwiczak, [ ... ], Dariusz Bartosik

Rapid Detection of Mycobacterium tuberculosis by Recombinase Polymerase Amplification

David S. Boyle, Ruth McNerney, [ ... ], Matthew S. Forrest

A Novel High-Resolution Single Locus Sequence Typing Scheme for Mixed Populations of Propionibacterium acnes In Vivo

Christian F. P. Scholz, Anders Jensen, [ ... ], Mogens Kilian

An Unclassified Microorganism: Novel Pathogen Candidate Lurking in Human Airways

Kazumasa Fukuda, Kazuhiro Yatera, [ ... ], Hatsumi Taniguchi

Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification

Lőrinc S. Pongor, Roberto Vera, Balázs Ligeti

These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure

Qingpeng Zhang, Jason Pell, [ ... ], C. Titus Brown

Genome Sequence of Candidatus Nitrososphaera evergladensis from Group I.1b Enriched from Everglades Soil Reveals Novel Genomic Features of the Ammonia-Oxidizing Archaea

Kateryna V. Zhalnina, Raquel Dias, [ ... ], Eric W. Triplett

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