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Bacterial genomics

Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis

Andrea D. Tyler, Sara Christianson, [ ... ], Meenu K. Sharma

Plasmid pEC156, a Naturally Occurring Escherichia coli Genetic Element That Carries Genes of the EcoVIII Restriction-Modification System, Is Mobilizable among Enterobacteria

Olesia Werbowy, Tadeusz Kaczorowski

Development of an Analysis Pipeline Characterizing Multiple Hypervariable Regions of 16S rRNA Using Mock Samples

Jennifer J. Barb, Andrew J. Oler, [ ... ], Nancy J. Ames

Carbapenem-Resistant Bacteria Recovered from Faeces of Dairy Cattle in the High Plains Region of the USA

Hattie E. Webb, Marie Bugarel, [ ... ], Guy H. Loneragan

Genomic Comparative Study of Bovine Mastitis Escherichia coli

Florent Kempf, Cindy Slugocki, [ ... ], Pierre Germon

Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus “Ferrovum”

Sophie R. Ullrich, Anja Poehlein, [ ... ], Martin Mühling

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing

James A. Stapleton, Jeongwoon Kim, [ ... ], Timothy A. Whitehead

Parallel Mapping of Antibiotic Resistance Alleles in Escherichia coli

Sophie J. Weiss, Thomas J. Mansell, [ ... ], Ryan T. Gill

Transcription Factors Exhibit Differential Conservation in Bacteria with Reduced Genomes

Edgardo Galán-Vásquez, Ismael Sánchez-Osorio, Agustino Martínez-Antonio

Comparative Analysis of Xenorhabdus koppenhoeferi Gene Expression during Symbiotic Persistence in the Host Nematode

Ruisheng An, Parwinder S. Grewal

Predominance of Single Prophage Carrying a CRISPR/cas System in “Candidatus Liberibacter asiaticus” Strains in Southern China

Zheng Zheng, Minli Bao, [ ... ], Xiaoling Deng

A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm

Daniel M. de Brito, Vinicius Maracaja-Coutinho, [ ... ], Thaís G. do Rêgo

Epigenetic Segregation of Microbial Genomes from Complex Samples Using Restriction Endonucleases HpaII and McrB

Guohong Liu, Christopher Q. Weston, [ ... ], R. Allyn Forsyth

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