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Bacterial genomics

Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC

Bruce Parrello, Rory Butler, [ ... ], Ross Overbeek

Evaluating domestication and ploidy effects on the assembly of the wheat bacterial microbiome

Heidi M. L. Wipf, Devin Coleman-Derr

Machine learning predicts and provides insights into milk acidification rates of Lactococcus lactis

Signe Tang Karlsen, Tammi Camilla Vesth, [ ... ], Jacob Bælum

De novo genome assembly of Bacillus altitudinis 19RS3 and Bacillus altitudinis T5S-T4, two plant growth-promoting bacteria isolated from Ilex paraguariensis St. Hil. (yerba mate)

Iliana Julieta Cortese, María Lorena Castrillo, [ ... ], Margarita Ester Laczeski

Distribution and preservation of the components of the engulfment. What is beyond representative genomes?

Lizeth Soto-Avila, Ricardo Ciria Merce, [ ... ], Rosa-María Gutierrez-Ríos

Whole genome genetic variation and linkage disequilibrium in a diverse collection of Listeria monocytogenes isolates

Swarnali Louha, Richard J. Meinersmann, Travis C. Glenn

Genomic diversity and organization of complex polysaccharide biosynthesis clusters in the genus Dickeya

Manish Ranjan, Devanshi Khokhani, [ ... ], Ashish Ranjan

Recombinase polymerase amplification assay combined with a dipstick-readout for rapid detection of Mycoplasma ovipneumoniae infections

Sandeep K. Gupta, Qing Deng, [ ... ], D. Neil Wedlock

Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water

Meghan Maguire, Julie A. Kase, [ ... ], Narjol González-Escalona

Efficient association mapping from k-mers—An application in finding sex-specific sequences

Zakaria Mehrab, Jaiaid Mobin, Ibrahim Asadullah Tahmid, Atif Rahman

metaVaR: Introducing metavariant species models for reference-free metagenomic-based population genomics

Romuald Laso-Jadart, Christophe Ambroise, Pierre Peterlongo, Mohammed-Amin Madoui

Prediction of Burkholderia pseudomallei DsbA substrates identifies potential virulence factors and vaccine targets

Ben Vezina, Guillaume A. Petit, Jennifer L. Martin, Maria A. Halili

Evaluating the number of different genomes in a metagenome by means of the compositional spectra approach

Valery Kirzhner, Dvora Toledano-Kitai, Zeev Volkovich

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