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Bacterial genomics

Profiling of Bacillus cereus on Canadian grain

Niradha Withana Gamage, Janice Bamforth, [ ... ], Sean Walkowiak

Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols

Broňa Brejová, Kristína Boršová, [ ... ], Jozef Nosek

A bioinformatics pipeline for Mycobacterium tuberculosis sequencing that cleans contaminant reads from sputum samples

Betzaida Cuevas-Córdoba, Cristóbal Fresno, [ ... ], Xavier Soberón

Sequencing DNA with nanopores: Troubles and biases

Clara Delahaye, Jacques Nicolas

Genomic signatures of Lake Erie bacteria suggest interaction in the Microcystis phycosphere

Alexa K. Hoke, Guadalupe Reynoso, [ ... ], Morgan M. Steffen

Direct sequencing of measles virus complete genomes in the midst of a large-scale outbreak

Efrat Bucris, Victoria Indenbaum, [ ... ], Neta S. Zuckerman

Novel Drexlerviridae bacteriophage KMI8 with specific lytic activity against Klebsiella michiganensis and its biofilms

Heng Ku, Mwila Kabwe, [ ... ], Joseph Tucci

Inconsistent PCR detection of Shiga toxin-producing Escherichia coli: Insights from whole genome sequence analyses

Vinicius Silva Castro, Rodrigo Ortega Polo, [ ... ], Kim Stanford

Prognosis of recurrent bacterial vaginosis based on longitudinal changes in abundance of Lactobacillus and specific species of Gardnerella

Essence Turner, Jack D. Sobel, Robert A. Akins

Distributed hybrid-indexing of compressed pan-genomes for scalable and fast sequence alignment

Altti Ilari Maarala, Ossi Arasalo, [ ... ], Keijo Heljanko

RNA polymerases in strict endosymbiont bacteria with extreme genome reduction show distinct erosions that might result in limited and differential promoter recognition

Cynthia Paola Rangel-Chávez, Edgardo Galán-Vásquez, [ ... ], Agustino Martínez-Antonio

Plasmid analysis of NDM metallo-β-lactamase-producing Enterobacterales isolated in Vietnam

Aki Hirabayashi, Koji Yahara, [ ... ], Masato Suzuki

Genomic insights into methicillin-resistant Staphylococcus pseudintermedius isolates from dogs and humans of the same sequence types reveals diversity in prophages and pathogenicity islands

Nathita Phumthanakorn, Sybille Schwendener, [ ... ], Nuvee Prapasarakul

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