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Algorithms

Read Length and Repeat Resolution: Exploring Prokaryote Genomes Using Next-Generation Sequencing Technologies

Matt J. Cahill, Claudio U. Köser, Nicholas E. Ross, John A. C. Archer

Evaluation of Algorithm Performance in ChIP-Seq Peak Detection

Elizabeth G. Wilbanks, Marc T. Facciotti

Network Conduciveness with Application to the Graph-Coloring and Independent-Set Optimization Transitions

Valmir C. Barbosa

GPS-SNO: Computational Prediction of Protein S-Nitrosylation Sites with a Modified GPS Algorithm

Yu Xue, Zexian Liu, [ ... ], Jian Ren

Conformational Determinants of Phosphotyrosine Peptides Complexed with the Src SH2 Domain

Joseph Nachman, Gerry Gish, [ ... ], Emil Pai

Flexible Kernel Memory

Dimitri Nowicki, Hava Siegelmann

Gene Set-Based Module Discovery Decodes cis-Regulatory Codes Governing Diverse Gene Expression across Human Multiple Tissues

Atsushi Niida, Seiya Imoto, [ ... ], Satoru Miyano

W-Curve Alignments for HIV-1 Genomic Comparisons

Douglas J. Cork, Steven Lembark, [ ... ], Jerome H. Kim

Validation of Coevolving Residue Algorithms via Pipeline Sensitivity Analysis: ELSC and OMES and ZNMI, Oh My!

Christopher A. Brown, Kevin S. Brown

Monte Carlo Simulation of Bony Heterogeneity Effects on Dose Profile for Small Irradiation Field in Radiotherapy

Simone C. Cardoso, Victor Gabriel L. Alves, [ ... ], Alessandro Facure

Involving Motor Capabilities in the Formation of Sensory Space Representations

Daniel Weiller, Robert Märtin, [ ... ], Peter König

Eigenvector Centrality Mapping for Analyzing Connectivity Patterns in fMRI Data of the Human Brain

Gabriele Lohmann, Daniel S. Margulies, [ ... ], Robert Turner

A Parallel Implementation of the Network Identification by Multiple Regression (NIR) Algorithm to Reverse-Engineer Regulatory Gene Networks

Francesco Gregoretti, Vincenzo Belcastro, Diego di Bernardo, Gennaro Oliva

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