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Algorithms

A Bayesian Search for Transcriptional Motifs

Andrew K. Miller, Cristin G. Print, Poul M. F. Nielsen, Edmund J. Crampin

High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur

Ulf Schaefer, Rimantas Kodzius, [ ... ], Vladimir B. Bajic

Improved Detection of Rare Genetic Variants for Diseases

Lei Zhang, Yu-Fang Pei, [ ... ], Hong-Wen Deng

Efficient Simulation of the Spatial Transmission Dynamics of Influenza

Meng-Tsung Tsai, Tsurng-Chen Chern, [ ... ], Tsan-Sheng Hsu

Comprehensive Approach to Analyzing Rare Genetic Variants

Thomas J. Hoffmann, Nicholas J. Marini, John S. Witte

Identification and Optimization of Classifier Genes from Multi-Class Earthworm Microarray Dataset

Ying Li, Nan Wang, [ ... ], Ping Gong

The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies

Mattia C. F. Prosperi, Andrea De Luca, [ ... ], Marco Salemi

Module Discovery by Exhaustive Search for Densely Connected, Co-Expressed Regions in Biomolecular Interaction Networks

Recep Colak, Flavia Moser, [ ... ], Martin Ester

ExprTarget: An Integrative Approach to Predicting Human MicroRNA Targets

Eric R. Gamazon, Hae-Kyung Im, [ ... ], Wei Zhang

DEGAS: De Novo Discovery of Dysregulated Pathways in Human Diseases

Igor Ulitsky, Akshay Krishnamurthy, Richard M. Karp, Ron Shamir

From Knockouts to Networks: Establishing Direct Cause-Effect Relationships through Graph Analysis

Andrea Pinna, Nicola Soranzo, Alberto de la Fuente

Competition on the Rocks: Community Growth and Tessellation

Espen Jettestuen, Anders Nermoen, [ ... ], Joachim Mathiesen

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

Vân Anh Huynh-Thu, Alexandre Irrthum, Louis Wehenkel, Pierre Geurts

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