High-resolution mapping of tuberculosis transmission: Whole genome sequencing and phylogenetic modelling of a cohort from Valencia Region, Spain

• Yuanwei Xu ,

  Contributed equally to this work with: Yuanwei Xu, Irving Cancino-Muñoz

  Roles Formal analysis, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Centre for Mathematics of Precision Healthcare, Department of Mathematics, Imperial College London, London, United Kingdom

  http://orcid.org/0000-0002-2337-3999

  ⨯
• Irving Cancino-Muñoz ,

  Contributed equally to this work with: Yuanwei Xu, Irving Cancino-Muñoz

  Roles Data curation, Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas, Valencia, Spain

  ⨯
• Manuela Torres-Puente,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas, Valencia, Spain

  http://orcid.org/0000-0002-8352-180X

  ⨯
• Luis M. Villamayor,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Genomics and Health Unit, FISABIO Public Health, Valencia, Spain

  ⨯
• Rafael Borrás,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital Clínico Universitario, Valencia, Spain

  http://orcid.org/0000-0001-5743-9768

  ⨯
• María Borrás-Máñez,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology and Parasitology Service, Hospital Universitario de La Ribera, Alzira, Spain

  ⨯
• Montserrat Bosque,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital Arnau de Vilanova, Valencia, Spain

  ⨯
• Juan J. Camarena,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital Universitario Dr. Peset, Valencia, Spain

  http://orcid.org/0000-0002-9863-6319

  ⨯
• Ester Colomer-Roig,

  Roles Methodology, Resources, Writing – review & editing

  Affiliations Genomics and Health Unit, FISABIO Public Health, Valencia, Spain, Microbiology Service, Hospital Universitario Dr. Peset, Valencia, Spain

  ⨯
• Javier Colomina,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology and Parasitology Service, Hospital Universitario de La Ribera, Alzira, Spain

  http://orcid.org/0000-0003-1654-3619

  ⨯
• Isabel Escribano,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Laboratory, Hospital Virgen de los Lírios, Alcoy, Spain

  ⨯
• Oscar Esparcia-Rodríguez,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital de Denia, Denia, Spain

  http://orcid.org/0000-0002-3721-848X

  ⨯
• Ana Gil-Brusola,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital Universitari i Politècnic La Fe, Valencia, Spain

  http://orcid.org/0000-0002-4418-3676

  ⨯
• Concepción Gimeno,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital General Universitario de Valencia, Valencia, Spain

  ⨯
• Adelina Gimeno-Gascón,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital General Universitario de Alicante, Alicante, Spain

  http://orcid.org/0000-0003-3728-3182

  ⨯
• Bárbara Gomila-Sard,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital General Universitario de Castellón, Castellon, Spain

  http://orcid.org/0000-0003-2858-2711

  ⨯
• Damiana González-Granda,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital Lluís Alcanyis, Xativa, Spain

  ⨯
• Nieves Gonzalo-Jiménez,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital General Universitario de Elche, Elche, Spain

  ⨯
• María Remedio Guna-Serrano,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital General Universitario de Valencia, Valencia, Spain

  ⨯
• José Luis López-Hontangas,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital Universitari i Politècnic La Fe, Valencia, Spain

  ⨯
• Coral Martín-González,

  Roles Methodology, Resources

  Affiliation Microbiology Service, Hospital Universitario de San Juan de Alicante, Alicante, Spain

  http://orcid.org/0000-0003-1156-9203

  ⨯
• Rosario Moreno-Muñoz,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital General Universitario de Castellón, Castellon, Spain

  ⨯
• David Navarro,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital Clínico Universitario, Valencia, Spain

  http://orcid.org/0000-0002-7271-3558

  ⨯
• María Navarro,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital de la Vega Baixa, Orihuela, Spain

  ⨯
• Nieves Orta,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital San Francesc de Borja, Gandía, Spain

  ⨯
• Elvira Pérez,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Subdirección General de Epidemiología y Vigilancia de la Salud, Dirección General de Salud Pública, Valencia, Spain

  ⨯
• Josep Prat,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital de Sagunto, Sagunto, Spain

  ⨯
• Juan Carlos Rodríguez,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital General Universitario de Alicante, Alicante, Spain

  http://orcid.org/0000-0001-8007-5739

  ⨯
• María Montserrat Ruiz-García,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Hospital Lluís Alcanyis, Xativa, Spain

  ⨯
• Herme Vanaclocha,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Subdirección General de Epidemiología y Vigilancia de la Salud, Dirección General de Salud Pública, Valencia, Spain

  ⨯
• Caroline Colijn ,

  Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: ccolijn@gmail.com (CC); icomas@ibv.csic.es (IC)

  ¶‡ These authors are joint senior authors on this work.

  Affiliations Centre for Mathematics of Precision Healthcare, Department of Mathematics, Imperial College London, London, United Kingdom, Department of Mathematics, Simon Fraser University, Burnaby, British Columbia, Canada

  http://orcid.org/0000-0001-6097-6708

  ⨯
•  [ ... ],
• Iñaki Comas

  Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: ccolijn@gmail.com (CC); icomas@ibv.csic.es (IC)

  ¶‡ These authors are joint senior authors on this work.

  Affiliation Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas, Valencia, Spain

  ⨯
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