Skip to main content
Advertisement
Table of Contents

November 2019

Sleep is traditionally considered to be a homeostatic process that resists deviation from equilibrium. In that regard, brief episodes of waking are viewed as perturbations that lead to sleep fragmentation and related sleep disorders. While addressing aspects of sleep regulation related to consolidated sleep and wake and the sleep-wake cycle, the homeostatic paradigm does not account for the dozens of abrupt sleep-stage transitions and micro-states within sleep stages throughout the night. Jilin WJL Wang et. al. test the hypothesis that, while sleep is homeostatic at time scales of hours and days, non-equilibrium dynamics and criticality underlie sleep micro-architecture at a shorter time scales. Their research shows that cortical arousals and brief awakenings during sleep exhibit non-equilibrium dynamics and complex organization across time scales which follow the same mathematical laws as earthquakes, and are necessary for maintaining healthy sleep.

Image Credit: Jilin WJL Wang and Plamen Ch. Ivanov, Keck Laboratory for Network Physiology, Boston University, USA

Research Articles

Competing endogenous RNA crosstalk at system level

Mattia Miotto, Enzo Marinari, Andrea De Martino

Cytoplasmic convection currents and intracellular temperature gradients

Rachel Howard, Aaron Scheiner, Jessica Cunningham, Robert Gatenby

Differential regulatory network-based quantification and prioritization of key genes underlying cancer drug resistance based on time-course RNA-seq data

Jiajun Zhang, Wenbo Zhu, Qianliang Wang, Jiayu Gu, L. Frank Huang, Xiaoqiang Sun

Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets

M. S. Vijayabaskar, Debbie K. Goode, Nadine Obier, Monika Lichtinger, Amber M. L. Emmett, Fatin N. Zainul Abidin, Nisar Shar, Rebecca Hannah, Salam A. Assi, Michael Lie-A-Ling, Berthold Gottgens, Georges Lacaud, Valerie Kouskoff, Constanze Bonifer, David R. Westhead

Feasibility of functional magnetic resonance imaging of ocular dominance and orientation preference in primary visual cortex

Marilia Menezes de Oliveira, James C. Pang, Peter A. Robinson, Xiaochen Liu, Mark M. Schira

Neural field models for latent state inference: Application to large-scale neuronal recordings

Michael E. Rule, David Schnoerr, Matthias H. Hennig, Guido Sanguinetti

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps

Camden Jansen, Ricardo N. Ramirez, Nicole C. El-Ali, David Gomez-Cabrero, Jesper Tegner, Matthias Merkenschlager, Ana Conesa, Ali Mortazavi

Network-based analysis of prostate cancer cell lines reveals novel marker gene candidates associated with radioresistance and patient relapse

Michael Seifert, Claudia Peitzsch, Ielizaveta Gorodetska, Caroline Börner, Barbara Klink, Anna Dubrovska

Bayesian inference of metabolic kinetics from genome-scale multiomics data

Peter C. St. John, Jonathan Strutz, Linda J. Broadbelt, Keith E. J. Tyo, Yannick J. Bomble

Prediction of PD-L1 inhibition effects for HIV-infected individuals

Valerya Zheltkova, Jordi Argilaguet, Cristina Peligero, Gennady Bocharov, Andreas Meyerhans

Tonic exploration governs both flexibility and lapses

R. Becket Ebitz, Brianna J. Sleezer, Hank P. Jedema, Charles W. Bradberry, Benjamin Y. Hayden

Uncovering the subtype-specific temporal order of cancer pathway dysregulation

Sahand Khakabimamaghani, Dujian Ding, Oliver Snow, Martin Ester

A population of bang-bang switches of defective interfering particles makes within-host dynamics of dengue virus controllable

Tarunendu Mapder, Sam Clifford, John Aaskov, Kevin Burrage

Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process

Jifan Shi, Tiejun Li, Luonan Chen, Kazuyuki Aihara

Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture

Jilin W. J. L. Wang, Fabrizio Lombardi, Xiyun Zhang, Christelle Anaclet, Plamen Ch. Ivanov

No substantial change in the balance between model-free and model-based control via training on the two-step task

Elmar D. Grosskurth, Dominik R. Bach, Marcos Economides, Quentin J. M. Huys, Lisa Holper

A model of how depth facilitates scene-relative object motion perception

Oliver W. Layton, D. C. Niehorster

Functional diversity among sensory neurons from efficient coding principles

Julijana Gjorgjieva, Markus Meister, Haim Sompolinsky

Large-scale cortical travelling waves predict localized future cortical signals

David M. Alexander, Tonio Ball, Andreas Schulze-Bonhage, Cees van Leeuwen

An in silico analysis of robust but fragile gene regulation links enhancer length to robustness

Kenneth Barr, John Reinitz, Ovidiu Radulescu

A mechanistic integrative computational model of macrophage polarization: Implications in human pathophysiology

Chen Zhao, Adam C. Mirando, Richard J. Sové, Thalyta X. Medeiros, Brian H. Annex, Aleksander S. Popel

Contrasting the impact of cytotoxic and cytostatic drug therapies on tumour progression

Jani V. Anttila, Mikhail Shubin, Johannes Cairns, Florian Borse, Qingli Guo, Tommi Mononen, Ignacio Vázquez-García, Otto Pulkkinen, Ville Mustonen

Predicting neuronal dynamics with a delayed gain control model

Jingyang Zhou, Noah C. Benson, Kendrick Kay, Jonathan Winawer

Cancer recurrence times from a branching process model

Stefano Avanzini, Tibor Antal

Anticipatory coadaptation of ankle stiffness and sensorimotor gain for standing balance

Charlotte Le Mouel, Romain Brette

Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity

George S. Watts, James E. Thornton Jr., Ken Youens-Clark, Alise J. Ponsero, Marvin J. Slepian, Emmanuel Menashi, Charles Hu, Wuquan Deng, David G. Armstrong, Spenser Reed, Lee D. Cranmer, Bonnie L. Hurwitz

Clustering-independent analysis of genomic data using spectral simplicial theory

Kiya W. Govek, Venkata S. Yamajala, Pablo G. Camara

Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.

Nicholas G. Reich, Craig J. McGowan, Teresa K. Yamana, Abhinav Tushar, Evan L. Ray, Dave Osthus, Sasikiran Kandula, Logan C. Brooks, Willow Crawford-Crudell, Graham Casey Gibson, Evan Moore, Rebecca Silva, Matthew Biggerstaff, Michael A. Johansson, Roni Rosenfeld, Jeffrey Shaman

Predicting Meridian in Chinese traditional medicine using machine learning approaches

Yinyin Wang, Mohieddin Jafari, Yun Tang, Jing Tang

Recurrent somatic mutations reveal new insights into consequences of mutagenic processes in cancer

Miranda D. Stobbe, Gian A. Thun, Andrea Diéguez-Docampo, Meritxell Oliva, Justin P. Whalley, Emanuele Raineri, Ivo G. Gut

A novel network control model for identifying personalized driver genes in cancer

Wei-Feng Guo, Shao-Wu Zhang, Tao Zeng, Yan Li, Jianxi Gao, Luonan Chen

Efficient sentinel surveillance strategies for preventing epidemics on networks

Ewan Colman, Petter Holme, Hiroki Sayama, Carlos Gershenson