Peer Review History
| Original SubmissionDecember 10, 2025 |
|---|
|
-->PCOMPBIOL-D-25-02573 FoMo: A Unifying Theory of Visual Foraging PLOS Computational Biology Dear Dr. Clarke, Thank you for submitting your manuscript to PLOS Computational Biology. After careful consideration, we feel that it has merit but does not fully meet PLOS Computational Biology's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Apr 19 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at ploscompbiol@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pcompbiol/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter We look forward to receiving your revised manuscript. Kind regards, Alejandro Tabas, Ph.D. Academic Editor PLOS Computational Biology Natalia Komarova Section Editor PLOS Computational Biology Journal Requirements: If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. 1) Please ensure that the CRediT author contributions listed for every co-author are completed accurately and in full. At this stage, the following Authors/Authors require contributions: Alasdair D. F. Clarke, and Anna E Hughes. Please ensure that the full contributions of each author are acknowledged in the "Add/Edit/Remove Authors" section of our submission form. The list of CRediT author contributions may be found here: https://journals.plos.org/ploscompbiol/s/authorship#loc-author-contributions 2) We ask that a manuscript source file is provided at Revision. Please upload your manuscript file as a .doc, .docx, .rtf or .tex. If you are providing a .tex file, please upload it under the item type u2018LaTeX Source Fileu2019 and leave your .pdf version as the item type u2018Manuscriptu2019. 3) Please provide an Author Summary. This should appear in your manuscript between the Abstract (if applicable) and the Introduction, and should be 150-200 words long. The aim should be to make your findings accessible to a wide audience that includes both scientists and non-scientists. Sample summaries can be found on our website under Submission Guidelines: https://journals.plos.org/ploscompbiol/s/submission-guidelines#loc-parts-of-a-submission 4) Your manuscript is missing the following sections: Methods. Please ensure all required sections are present and in the correct order. Make sure section heading levels are clearly indicated in the manuscript text, and limit sub-sections to 3 heading levels. An outline of the required sections can be consulted in our submission guidelines here: https://journals.plos.org/ploscompbiol/s/submission-guidelines#loc-parts-of-a-submission 5) Please upload all main figures as separate Figure files in .tif or .eps format. For more information about how to convert and format your figure files please see our guidelines: https://journals.plos.org/ploscompbiol/s/figures Reviewers' comments: Reviewer's Responses to Questions Comments to the Authors: Please note here if the review is uploaded as an attachment. Reviewer #1: Generally speaking I have been enthusiastic about the approach that this group uses and the modelling approach that they presented recently. They now provide a fine addition to their previous modelling. This is for sure a nice continuation of their work until now, that continues their previous work in a logical way. So at this point, I do not have many comments, and I think that this is a good contribution to the literature. I also think that their coverage of the literature is quite comprehensive, but I have comments, however (see below) Here, the authors add a spatial component to their previous model and that is why the authors call this a “unifying” model of foraging. The idea behind the model being “unifying” is that it can explain data from differing paradigms. There is a very important component missing, if this is to be comprehensive, however. Any forager in the real world will face a constantly dynamic, changing scene. Of course, this adds massive computational complexity, but this, nevertheless cannot go unaddressed (see below). I would encourage the authors to speculate, if not implement how their model would work in a real-world setting. They do rightfully mention that foraging tasks are a pretty good analogue to real-world scenarios. For humans, the main tasks involve gathering information, the frontal lobe equivalent of more basic tectum-based chicken foraging. While I do not claim that the authors are stuck within their own paradigm, I do encourage them to try to take this to more general scenarios. Let’s say I try to cross a busy street. For this, I need to gather lots of information (forage for information), how does the model help us understand how that might occur? The “problem” is that these are non-dynamic scenes. Foraging during continuously changing scenes, must therefore be on the menu? I highlight Thornton et al. (https://link.springer.com/article/10.1186/s41235-021-00299-w; see also https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0219827) as an important consideration – these paradigms get closer to real world scenarios, in my opinion, and that is what the authors in the current manuscript are after. I am not asking the authors to explicitly model theses sort of paradigms, but to speculate what the next steps could look like. One minor point but could be important is that the authors refer to summary statistics regarding previous treatment of foraging results. The term “summary statistics” is quite loaded in the literature on visual cognition. So I simply want to warn the authors that many people may think of how ensembles are summarized in perception when they hear this term. Reviewer #2: All attached Reviewer #3: This is an interesting paper describing the next version of the authors’ FoMo (Foraging Model). Version 1.3 includes a directional component that helps in the prediction of what item gets picked next in a foraging task. The model does a very decent job of predicting behavior in several datasets. Someone other than me should vouch for the computational details of the model but it looks solid to me. I have a few issues, large and small 1) My main concern is that FoMo is, at present, a big hammer that is hitting a rather small nail. There is a lot of modeling here for purposes of explaining a rather restricted set of data. FoMo “currently assumes exhaustive foraging”. This is fine for analyzing Kristjansson-style data where Os are instructed to search exhaustively for two types of target. I suspect that non-exhaustive foraging is much less systematic and, indeed, apparently FoMo does not do as well with the Tagu data which (I gather) is non-exhaustive. So, I worry if FoMo might be a lot of model for showing that Os tend to search very systematically when forced to find everything. 2) At the very least, you should be saying more about the distinction between exhaustive and non-exhaustive search tasks. For instance, in section 2.5, you should be more explicit about the instructions in the tasks that are being modeled I don’t think you mention that the Tagu task is non-exhaustive. That point comes up later. 3) Switching behavior is also quite different (I think) in non-exhaustive foraging: e.g. Wolfe, J. M., Cain, M. S., & Aizenman, A. M. (2019). Guidance and selection history in hybrid foraging visual search [journal article]. Atten Percept Psychophys, 81(3), 637-653. https://doi.org/10.3758/s13414-018-01649-5 4) Oh, and that paper looks at switching between four target types. How would FOMO do with that? 5) I wonder how well a really simple nearest neighbor model do with standard Kristjansson data? Such a model would have a switch probability (low for conj, higher for feature) and then just a simple nearest neighbor rule. That might be a nice benchmark to show how FoMo can do. Some smaller points 6) P3 says , about our driller/scanner work; “radiologists who adopted a ’scanning’ strategy, searching an entire 2D scan before moving in depth performed more poorly, making more search errors, compared to participants who had a ’drilling’ strategy, restricting their eye movements to one portion of the image and scrolling through in depth (37).” I did not go back to check, but my recollection is that you are right in numerical terms but that the difference is not statistically reliable. Hard to get the required power with radiologist observers. 7) On P7, I could have used a few more words justifying the negative exponential 8) And on P8 “Constraining K”, I could use some more explanation about the added parameters. What are they doing? 9) For the FoMo description, I would add a table of terms as an appendix or something. I can’t keep them in memory. (b(a), b(s)….etc) 10) Fig 5 is very small and hard to read. 11) P14 says “with most participants beginning in the top right-hand corner” Not top left as in reading? See figs 1 and 7? In sum, the FoMo project is a good and rigorous one. I think the current version is a bit limited in its scope. I hope that FoMo2 predicts quitting times, for example. Nevertheless, FoMo represents one of the best efforts to formally model human foraging behavior. Thanks Jeremy Wolfe (obviously signed review) ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: None Reviewer #2: Yes Reviewer #3: Yes ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Beatriz Gil-Gómez de Liaño Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: While revising your submission, we strongly recommend that you use PLOS’s NAAS tool (https://ngplosjournals.pagemajik.ai/artanalysis) to test your figure files. NAAS can convert your figure files to the TIFF file type and meet basic requirements (such as print size, resolution), or provide you with a report on issues that do not meet our requirements and that NAAS cannot fix. After uploading your figures to PLOS’s NAAS tool - https://ngplosjournals.pagemajik.ai/artanalysis, NAAS will process the files provided and display the results in the "Uploaded Files" section of the page as the processing is complete. If the uploaded figures meet our requirements (or NAAS is able to fix the files to meet our requirements), the figure will be marked as "fixed" above. If NAAS is unable to fix the files, a red "failed" label will appear above. When NAAS has confirmed that the figure files meet our requirements, please download the file via the download option, and include these NAAS processed figure files when submitting your revised manuscript. Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols -->
|
| Revision 1 |
|
PCOMPBIOL-D-25-02573R1 FoMo: A Unifying Theory of Visual Foraging PLOS Computational Biology Dear Dr. Clarke, Thank you for submitting your manuscript to PLOS Computational Biology. After careful consideration, we feel that it has merit but does not fully meet PLOS Computational Biology's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jun 16 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at ploscompbiol@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pcompbiol/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Alejandro Tabas, Ph.D. Academic Editor PLOS Computational Biology Natalia Komarova Section Editor PLOS Computational Biology Journal Requirements: 1) Please ensure that the affiliation of the author Clarke is listed on in the "Affiliation" tab in the online submission form. 2) Please ensure that the figures are uploaded in a correct numerical order in the online submission form. Note: If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. Reviewers' comments: Reviewer's Responses to Questions Reviewer #1: I have no further comments and recommend publication Reviewer #2: Thanks for all changes, I think the paper is ready to be published. Reviewer #3: This is a fairly lightly revised paper describing the latest version of the detailed FOMO model of human visual foraging. I still wish that the model had been deployed on a richer set of phenomena. The discussion in the Response to Review is quite interesting, pointing in more wide-ranging directions than are found in the revisions to the paper. Nevertheless, the existing paper will be a useful documentation of the current state of an evolving model. A few minor bits P6 says These four features are illustrated in Figure 3. These are more formally defined in Section 2.1, ….” Are those the right section #s? I think you mean maybe 3.2. P 11 says “This dataset is inexhaustive; participants had to collect a certain number of points on each trial, but this did not necessarily correspond to collecting all targets on the screen.” This makes it sound like the dataset is incomplete. Maybe something like “The Tagu et al task did not require that Os collect all targets in one patch before moving on to the next patch. They were required to collect (at least??) N points per patch” Now that I can see Fig 6, I don’t fully understand it. The numbers on the axes on the lefthand figure are accuracy? The secondary Y-axis is a reference to a dataset? And what is HPDI? (not High-Pressure Direct Injection, I am guessing) Jeremy Wolfe ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: None Reviewer #2: None Reviewer #3: None ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Beatriz Gil-Gómez de Liaño, Ph.D. Reviewer #3: Yes: Jeremy Wolfe (But I think publishing reviews is not a good idea) [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: -->While revising your submission, we strongly recommend that you use PLOS’s NAAS tool (https://ngplosjournals.pagemajik.ai/artanalysis) to test your figure files. NAAS can convert your figure files to the TIFF file type and meet basic requirements (such as print size, resolution), or provide you with a report on issues that do not meet our requirements and that NAAS cannot fix.-->--> After uploading your figures to PLOS’s NAAS tool - https://ngplosjournals.pagemajik.ai/artanalysis, NAAS will process the files provided and display the results in the "Uploaded Files" section of the page as the processing is complete. If the uploaded figures meet our requirements (or NAAS is able to fix the files to meet our requirements), the figure will be marked as "fixed" above. If NAAS is unable to fix the files, a red "failed" label will appear above. When NAAS has confirmed that the figure files meet our requirements, please download the file via the download option, and include these NAAS processed figure files when submitting your revised manuscript.--> Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols |
| Revision 2 |
|
Dear Clarke, We are pleased to inform you that your manuscript 'FoMo: A Unifying Theory of Visual Foraging' has been provisionally accepted for publication in PLOS Computational Biology. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Computational Biology. Best regards, Alejandro Tabas, Ph.D. Academic Editor PLOS Computational Biology Natalia Komarova Section Editor PLOS Computational Biology *********************************************************** |
| Formally Accepted |
|
PCOMPBIOL-D-25-02573R2 FoMo: A Unifying Theory of Visual Foraging Dear Dr Clarke, I am pleased to inform you that your manuscript has been formally accepted for publication in PLOS Computational Biology. Your manuscript is now with our production department and you will be notified of the publication date in due course. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Soon after your final files are uploaded, unless you have opted out, the early version of your manuscript will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. For Research, Software, and Methods articles, you will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. Thank you again for supporting PLOS Computational Biology and open-access publishing. We are looking forward to publishing your work! With kind regards, Lilla Horvath PLOS Computational Biology | Carlyle House, Carlyle Road, Cambridge CB4 3DN | United Kingdom ploscompbiol@plos.org | Phone +44 (0) 1223-442824 | ploscompbiol.org | @PLOSCompBiol |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .