PCOMPBIOL-D-25-02445

Unveiling Gene Perturbation Effects through Gene Regulatory Networks Inference from single-cell transcriptomic data

PLOS Computational Biology

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Paolo Milazzo

Academic Editor

PLOS Computational Biology

Mark Alber

Section Editor

PLOS Computational Biology

Additional Editor Comments:

One of the reviewers asks for some improvements, mostly as regards presentation aspects and justification for some methodological choices. The authors should address these requests in a new version of the paper. The reviewer also suggests the authors to adopt a different packaging for the source code. This is a good suggestion to improve the usability of the code, but not mandatory for the acceptance of the paper.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Authors:

Please note here if the review is uploaded as an attachment.

Reviewer #1: The authors have adequately addressed my concerns in this revised version of the manuscript.

Reviewer #2: My comments have been uploaded as an attachment.

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Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: No

Reviewer #2: No

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Attachments

Attachment

Submitted filename: corridori-et-al-review.pdf

Dear Professor Martello,

We are pleased to inform you that your manuscript 'Unveiling Gene Perturbation Effects through Gene Regulatory Networks Inference from single-cell transcriptomic data' has been provisionally accepted for publication in PLOS Computational Biology.

Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests.

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Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Computational Biology.

Best regards,

Paolo Milazzo

Academic Editor

PLOS Computational Biology

Mark Alber

Section Editor

PLOS Computational Biology

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All reviewer comments have been fully addressed.