Peer Review History
| Original SubmissionAugust 23, 2025 |
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PCOMPBIOL-D-25-01707 A theory for self-sustained balanced states in absence of strong external currents PLOS Computational Biology Dear Dr. Angulo-Garcia, Thank you for submitting your manuscript to PLOS Computational Biology. After careful consideration, we feel that it has merit but does not fully meet PLOS Computational Biology's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 20 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at ploscompbiol@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pcompbiol/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A rebuttal letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter We look forward to receiving your revised manuscript. Kind regards, Arvind Kumar, Ph.D. Academic Editor PLOS Computational Biology Hugues Berry Section Editor PLOS Computational Biology Additional Editor Comments: The two reviewers have requested a major revision of the manuscript to clarify several points that are crucial to both results and interpretation of the results. Their comments are attached and we look forward to reading the revised version. Journal Requirements: 1) Please ensure that the CRediT author contributions listed for every co-author are completed accurately and in full. At this stage, the following Authors/Authors require contributions: David Angulo-Garcia, and Alessandro Torcini. Please ensure that the full contributions of each author are acknowledged in the "Add/Edit/Remove Authors" section of our submission form. The list of CRediT author contributions may be found here: https://journals.plos.org/ploscompbiol/s/authorship#loc-author-contributions 2) We ask that a manuscript source file is provided at Revision. Please upload your manuscript file as a .doc, .docx, .rtf or .tex. If you are providing a .tex file, please upload it under the item type u2018LaTeX Source Fileu2019 and leave your .pdf version as the item type u2018Manuscriptu2019. 3) Please upload all main figures as separate Figure files in .tif or .eps format. For more information about how to convert and format your figure files please see our guidelines: https://journals.plos.org/ploscompbiol/s/figures 4) We notice that your supplementary Figures, and information are included in the manuscript file. Please remove them and upload them with the file type 'Supporting Information'. Please ensure that each Supporting Information file has a legend listed in the manuscript after the references list. Reviewers' comments: Reviewer's Responses to Questions Comments to the Authors: Please note here if the review is uploaded as an attachment. Reviewer #1: In this manuscript, the authors consider networks of excitatory and inhibitory neurons in a balanced state at large system size. Unlike previous work in which external inputs to the network is strong in the limit of large network size, their model produces self-sustained non-vanishing activity in the large network limit with weak or absent external input. This is achieved with short term synaptic depression on synapses between excitatory neurons. The authors use asymptotic analysis and computer simulations to explore steady-state and non-steady state dynamics, for example chaos, in the networks. The manuscript makes a novel contribution to the mathematical analysis of these types of networks. Major comments: 1) A central motivation for the models studied in this manuscript is that traditional balanced networks require that mean external input to each neuron scales like O(sqrt(K)) where K is the in-degree of a typical neuron. The authors are correct to point out that this has been challenged by recent theoretical work (refs 9 and 10) and that it might contradict some experimental evidence (refs 11-15), but their discussion of these points lacks nuance in such a way that it could mislead readers who are not familiar with the literature on balanced networks. First, the authors fail to acknowledge that strong external input follows from modeling feedforward synaptic connections in the same way that they model recurrent connections: If neurons receive O(sqrt K) feedforward synaptic inputs and feedforward synaptic weights scale like 1/sqrt(K), like they have assumed of recurrent connectivity, then O(sqrt K) external input follows. If feedforward input is O(1) then feedforward synaptic inputs must either be sparser (O(1) in number instead of O(K)) or weaker (O(1/K) in strength instead of O(1/sqrt K)) than recurrent synaptic inputs. The authors should acknowledge this point and cite any evidence they have for one or the other possibility (sparser or weaker feedforward input). On a similar note, the authors' model predicts that the average recurrent input from excitatory neurons is large (and similarly for inhibitory neurons), so feedforward input is vanishingly weak compared to each of these two sources of recurrent input. Specifically, their model assumes that recurrent excitation and recurrent inhibition are each O(sqrt K). While this fact does follow from their equations, it is never mentioned, or at least it is not mentioned where the relative strengths of feedforward and recurrent input is discussed (eg, in the second paragraph of the Introduction). The prediction that feedforward input is vanishingly small compared to recurrent input is a fundamental prediction of their model, and it should be mentioned explicitly (for example, in the second paragraph of the Introduction, after eq 5, and/or in the Discussion section). 2) In Eq 6, it is shown that steady state rates in the limit do not depend on the stimulus, I0. This would, of course, be an undesirable property of a neural network since the network should respond to stimuli. The authors later show in Fig 2 that the network does respond to the stimulus whenever N is finite and smaller in scale than one trillion (10^12). As it turns out, the asymptotic steady states in Eq 6 are actually quite inaccurate for reasonable parameter regimes (when N=10^12, neurons receive literally billions of synaptic inputs, which around a million times larger than reality). I think this point should be acknowledged. Specifically, the N=10^12 results are perhaps interesting from a mathematical perspective to verify the asymptotic equations, but the realistic values of N are much smaller, and do not adhere to the asymptotic steady state. 3) On a similar note to the previous comment, I0 does not appear in Eq 6 because it is omitted from the sqrt K scaling in Eq 5. However, a more accurate approximation could be obtained by moving the the terms I0/(sqrt(N)*J0*jX) into the parenthesis in Eq 5 and then solving the resulting linear equation to produce a version of Eq 6 that depends on N (the equation for w0 might need to be derived differently). This approximation could be plotted in Fig 2 panels C and D alongside the existing approximations. It would be worth checking whether this gives a more accurate approximation than Eq 5, particularly at larger values of I0. 4) On a related note, how does the magnitude of I0 compare to the magnitude of the total input in Fig 2 C and D? The authors' motivation for their model is that I0 is comparable to the total input (and therefore much smaller than the recurrent excitatory and recurrent inhibitory inputs individually). This is clearly accurate when I0=0 and when N=10^12, but how accurate is it for more reasonable values of N when I0 is larger? The authors could plot this ratio (either I0 versus total, or I0 versus recurrent exc) for the simulations in Fig 2C and D, either as a supplementary figure or within the main text. Minor comments: 1) In the abstract, when the authors write "this novel balancing mechanism", it reads as if they are referring to rate chaos, whereas I am sure that they mean to refer to synaptic depression. It could be rephrase for clarity. 2) The authors consider EE short term plasticity, but not EI, IE, or II. Can the authors comment on this? Would other forms of short term plasticity achieve similar results? What if they were all combined into one model? 3) The Discussion section appears after the Methods section. This seems unusual and interrupts the reading process. Reviewer #2: The article examines the dynamics that arise from incorporating short-term synaptic depression (STD) between excitatory–excitatory (E–E) neuron pairs in a neural rate-based network. The authors analyze the homogeneous and heterogeneous fixed points, as well as the perturbations around them. They also study the transition to chaos in finite-size networks and the convergence of this transition in the limit of large (effectively infinite) network size. Overall, the manuscript is mathematically sound, and the derivations are clear and consistent. However, the writing and logical flow are often difficult to follow. My main concern is that it is difficult to identify the contribution of this study. The finite-size effects discussed here are well known for rate models and can arise even without including STD. The mean-field treatment and the use of eigenvalue spectra are also standard tools in this literature. As written, it is not evident what new insight is provided specifically by the inclusion of STD. The term “massively connected” corresponds to all-to-all connectivity, although it is well established that sparse random connectivity with the same weight statistics yields identical dynamics (up to scaling by sparsity). Most of (and possibly all) the reported phenomena appear qualitatively reproducible with simpler rate models lacking STD. For revision, I suggest that the authors clearly delineate the novel contributions of the work. In particular, they should emphasize what genuinely new dynamical phenomena arise in the large-N limit due to STD, and why these cannot be obtained from standard rate models. ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: None ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: While revising your submission, we strongly recommend that you use PLOS’s NAAS tool (https://ngplosjournals.pagemajik.ai/artanalysis) to test your figure files. NAAS can convert your figure files to the TIFF file type and meet basic requirements (such as print size, resolution), or provide you with a report on issues that do not meet our requirements and that NAAS cannot fix. After uploading your figures to PLOS’s NAAS tool - https://ngplosjournals.pagemajik.ai/artanalysis, NAAS will process the files provided and display the results in the "Uploaded Files" section of the page as the processing is complete. If the uploaded figures meet our requirements (or NAAS is able to fix the files to meet our requirements), the figure will be marked as "fixed" above. If NAAS is unable to fix the files, a red "failed" label will appear above. When NAAS has confirmed that the figure files meet our requirements, please download the file via the download option, and include these NAAS processed figure files when submitting your revised manuscript. Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. 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| Revision 1 |
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PCOMPBIOL-D-25-01707R1 A theory for self-sustained balanced states in absence of strong external currents PLOS Computational Biology Dear Dr. Angulo-Garcia, Thank you for submitting your manuscript to PLOS Computational Biology. After careful consideration, we feel that it has merit but does not fully meet PLOS Computational Biology's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 24 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at ploscompbiol@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pcompbiol/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter We look forward to receiving your revised manuscript. Kind regards, Arvind Kumar, Ph.D. Academic Editor PLOS Computational Biology Hugues Berry Section Editor PLOS Computational Biology Additional Editor Comments: I apologize for the delay in the processing of your manuscript. The reviewers thought that their main concerns were adequately addressed. However, one of the reviewers commented that “I still find the manuscript difficult to follow”. This was already a concern in the first round (Q1 Reviewer #2). Therefore, I contacted the reviewer to discuss the manuscript. In addition, I also went through the manuscript more carefully. I think there are some places where the manuscript needs work both in the presentation of the results and claims that have been made. The main claim of the manuscript is the emergence of self-sustained activity, which by definition would mean I_0 = 0. Then authors argue that a balanced state emerges for weaker feedforward inputs, unlike more classical work on this topic. While the mathematical analysis is correct, authors should note that the neuron transfer function (eq4) allows the neuron to have a nonzero response for zero input. So the claims about self-sustained activity and balanced state for weak inputs are a direct consequence of the neuron's transfer function choice. If neurons are intrinsically active (eq4) then self-sustained activity can arise even without connectivity. If the authors want to make the two aforementioned claims they must show the results for a realistic neuron transfer function (zero firing rate for zero input and strictly positive firing rate). And also please show the self-sustained activity for LIF neuron network. Next, the results are not exclusively dependent on EEstd but different choice \phi for excitatory neurons in eq5 can also give non zero solutions. I was also surprised by the omission of some important (maybe old) papers on self-sustained activity in balanced networks. One of the better analyses of self-sustained activity in rate based models was done by Latham et al. (J. Neurophysiol. 83(2):808-827 (2000). They showed that self-sustained activity requires intrinsically active neurons in a network. Later, Vogels and Abbott (J. Neurosci. 2005) showed self-sustained activity in a network where neurons were connected with both conductance and current based synapses. Then we (Kumar et al. 2008 Neural Computation) showed self-sustained activity in a sparse network with conductance based synapses. The reviewer also raised an issue with the presentation of the paper. The reviewer thought that first you should show the results with N large enough to provide the "infinite " solution and then push the N-dependent solutions at the end. The focus on finite size effects is interesting but not unique to the model. I would again request you to go through the comments of the second reviewer to adjust the presentation of the manuscript. Journal Requirements: If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. Reviewers' comments: Reviewer's Responses to Questions Comments to the Authors: Please note here if the review is uploaded as an attachment. Reviewer #1: The authors have addressed all of my comments. Reviewer #2: I was convinced of the interest I still find the manuscript difficult to follow ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No: I can only find figures, no code or data. But maybe I am missing it somehow. Reviewer #2: Yes ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Robert Rosenbaum Reviewer #2: No Figure resubmission: While revising your submission, we strongly recommend that you use PLOS’s NAAS tool (https://ngplosjournals.pagemajik.ai/artanalysis) to test your figure files. NAAS can convert your figure files to the TIFF file type and meet basic requirements (such as print size, resolution), or provide you with a report on issues that do not meet our requirements and that NAAS cannot fix. After uploading your figures to PLOS’s NAAS tool - https://ngplosjournals.pagemajik.ai/artanalysis, NAAS will process the files provided and display the results in the "Uploaded Files" section of the page as the processing is complete. If the uploaded figures meet our requirements (or NAAS is able to fix the files to meet our requirements), the figure will be marked as "fixed" above. If NAAS is unable to fix the files, a red "failed" label will appear above. When NAAS has confirmed that the figure files meet our requirements, please download the file via the download option, and include these NAAS processed figure files when submitting your revised manuscript. Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols |
| Revision 2 |
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Dear Angulo-Garcia, We are pleased to inform you that your manuscript 'A theory for self-sustained balanced states in absence of strong external currents' has been provisionally accepted for publication in PLOS Computational Biology. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Computational Biology. Best regards, Arvind Kumar, Ph.D. Academic Editor PLOS Computational Biology Hugues Berry Section Editor PLOS Computational Biology *********************************************************** I am happy with the revision. Both the reorganisation of the text and additional results address the concerns raised by the reviewers and the editor. Congratulations for a very fine paper. |
| Formally Accepted |
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PCOMPBIOL-D-25-01707R2 A theory for self-sustained balanced states in absence of strong external currents Dear Dr Angulo-Garcia, I am pleased to inform you that your manuscript has been formally accepted for publication in PLOS Computational Biology. Your manuscript is now with our production department and you will be notified of the publication date in due course. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Soon after your final files are uploaded, unless you have opted out, the early version of your manuscript will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. For Research, Software, and Methods articles, you will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. Thank you again for supporting PLOS Computational Biology and open-access publishing. We are looking forward to publishing your work! With kind regards, Anita Estes PLOS Computational Biology | Carlyle House, Carlyle Road, Cambridge CB4 3DN | United Kingdom ploscompbiol@plos.org | Phone +44 (0) 1223-442824 | ploscompbiol.org | @PLOSCompBiol |
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