Peer Review History
| Original SubmissionOctober 23, 2024 |
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PCOMPBIOL-D-24-01820 Traveling Waves in the Human Visual Cortex: an MEG-EEG Model-Based Approach PLOS Computational Biology Dear Dr. Grabot, Thank you for submitting your manuscript to PLOS Computational Biology. After careful consideration, we feel that it has merit but does not fully meet PLOS Computational Biology's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript within 30 days Feb 12 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at ploscompbiol@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pcompbiol/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. 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Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Alain Nogaret, PhD Academic Editor PLOS Computational Biology Joseph Ayers Section Editor PLOS Computational Biology Additional Editor Comments: All three reviewers have deemed the work interesting, original and well-written. They have also made suggestions for minor improvements and for broadening the discussion that you will want to consider. Journal Requirements: 1) We ask that a manuscript source file is provided at Revision. Please upload your manuscript file as a .doc, .docx, .rtf or .tex. If you are providing a .tex file, please upload it under the item type u2018LaTeX Source Fileu2019 and leave your .pdf version as the item type u2018Manuscriptu2019. 2) Please upload all main figures as separate Figure files in .tif or .eps format. For more information about how to convert and format your figure files please see our guidelines: https://journals.plos.org/ploscompbiol/s/figures 3) We notice that your supplementary Figures are included in the manuscript file. Please remove them and upload them with the file type 'Supporting Information'. Please ensure that each Supporting Information file has a legend listed in the manuscript after the references list. 4) Please ensure that the funders and grant numbers match between the Financial Disclosure field and the Funding Information tab in your submission form. Note that the funders must be provided in the same order in both places as well. - State the initials, alongside each funding source, of each author to receive each grant. For example: "This work was supported by the National Institutes of Health (####### to AM; ###### to CJ) and the National Science Foundation (###### to AM)." - State what role the funders took in the study. If the funders had no role in your study, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.". If you did not receive any funding for this study, please simply state: u201cThe authors received no specific funding for this work.u201 Reviewers' comments: Reviewer's Responses to Questions Comments to the Authors: Please note here if the review is uploaded as an attachment. Reviewer #1: It is an interesting study; the reviewer has some comments. 1. Please consider further exploring why the standing model does not show greater specificity. Alternatively, discuss in more detail the implications of standing stimuli potentially generating endogenous traveling waves. 2. The study highlights differences in the specificity and predicted topographies for MEG and EEG, with EEG predictions showing less granularity and specificity. Please elaborate on the practical implications of these differences. 3. The study is currently limited to simulating activity in V1. Provide a brief outline of how the model could be expanded to include multiple areas. 4. The study briefly mentions that the tool could test hypotheses about neural oscillation propagation and the generation of MEG-EEG signals. Please strengthen this point by providing concrete examples of such hypotheses and how this tool could be applied. 5. The model explains over 44% of the variance in the data, which is promising but leaves a significant portion unexplained. Please discuss the potential sources of unexplained variance. 6. Please expand on the observed differences between MEG and EEG predictions in the Discussion section. Specifically, consider elaborating on the practical implications of these differences for integrating MEG and EEG data in future studies. Reviewer #2: In the present work, Grabot and colleagues aim at developing a model-based neuroimaging approach to assess traveling waves in non-invasive recordings. They compared the model's performances to MEG-EEG signals obtained during controlled experimental conditions. The authors were able to explain 44% of the variance of data. The methodology is rigorous and the results well presented, with useful and detailed figures. I have only a few minor concerns that I would ask the authors to address to improve the manuscript's clarity. INTORDUCTION - Before starting describing the two-part model, I would add a brief description of the EEG and MEG methodologies, especially focusing on the fact that spacial discrimination is not their main strenght. -I would also suggest to better define "standing" and "travelling" waves. RESULTS - The authors say that they can explain around 44% of the variance of the data: I would add a comparison with other models or a sort of comparator to give an effect size of predictive performance (mild-moderate-great). DISCUSSION - Ath the end of the discussion session, I would reprase the conclusive sentence "This approach aligns with the advocated need for an integrated view of brain functioning across time and space to understand the multiscale basis of cognition". Given that the authors claim it's the first work of the kind, I would not overstate the implications of their novel approach. Reviewer #3: This is a very intriguing, novel, well-designed, and well-written work. I have only a few minor comments. Please provide full information about the funding: Initials of the authors who received each award; URL of each funder website; Did the sponsors or funders play any role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript? Please indicate a possible significance of the results in cognition. The authors only briefly mention this matter in one sentence. I'd like the Authors to expand this fragment. Please provide explanations of the abbreviations used in the figures. E.g. in fig. 1.: 'VM' and 'HM'. Experimental procedure Could you please add the mean total time of the experimental session? A figure presenting the experimental protocol would also help in visualizing the details of the experimental procedure. Since the color change to maintain participants' attention occurred during the M/EEG epoch - were these trials excluded from the analysis? MEG-EEG pre-processing How were the blinks during the stimulus presentation handled? Usually, before the ICA, the stimuli during which an eye blink occurred are identified, and then these trials are excluded from the analysis to prevent analyzing trials where the participants did not see the stimulus. Comparison between predicted and measured data I think the information provided in this section (or at least the first part) should be moved to the 'MEG-EEG pre-processing' section. Results Some of the information is repeated after other sections. ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. If there are other versions of figure files still present in your submission file inventory at resubmission, please replace them with the PACE-processed versions. 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| Revision 1 |
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Dear Dr Grabot, We are pleased to inform you that your manuscript 'Traveling Waves in the Human Visual Cortex: an MEG-EEG Model-Based Approach' has been provisionally accepted for publication in PLOS Computational Biology. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Computational Biology. Best regards, Alain Nogaret, PhD Academic Editor PLOS Computational Biology Joseph Ayers Section Editor PLOS Computational Biology Daniele Marinazzo Section Editor PLOS Computational Biology *********************************************************** Having carefully checked the changes made in the manuscript in response to reviewers queries, it is clear that the additional details provided on the method and implications of the findings have met these queries. |
| Formally Accepted |
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PCOMPBIOL-D-24-01820R1 Traveling Waves in the Human Visual Cortex: an MEG-EEG Model-Based Approach Dear Dr Grabot, I am pleased to inform you that your manuscript has been formally accepted for publication in PLOS Computational Biology. Your manuscript is now with our production department and you will be notified of the publication date in due course. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Soon after your final files are uploaded, unless you have opted out, the early version of your manuscript will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting PLOS Computational Biology and open-access publishing. We are looking forward to publishing your work! With kind regards, Anita Estes PLOS Computational Biology | Carlyle House, Carlyle Road, Cambridge CB4 3DN | United Kingdom ploscompbiol@plos.org | Phone +44 (0) 1223-442824 | ploscompbiol.org | @PLOSCompBiol |
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