Peer Review History
| Original SubmissionOctober 22, 2024 |
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PCOMPBIOL-D-24-01803 A comprehensive investigation of intracortical and corticothalamic models of alpha rhythms PLOS Computational Biology Dear Dr. Bastiaens, Thank you for submitting your manuscript to PLOS Computational Biology. After careful consideration, we feel that it has merit but does not fully meet PLOS Computational Biology's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript within 30 days Mar 02 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at ploscompbiol@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pcompbiol/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. 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Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Jonathan David Touboul Academic Editor PLOS Computational Biology Hugues Berry Section Editor PLOS Computational Biology Journal Requirements: 1) Please ensure that the CRediT author contributions listed for every co-author are completed accurately and in full. At this stage, the following Authors/Authors require contributions: Sorenza Pawla Bastiaens. Please ensure that the full contributions of each author are acknowledged in the "Add/Edit/Remove Authors" section of our submission form. The list of CRediT author contributions may be found here: https://journals.plos.org/ploscompbiol/s/authorship#loc-author-contributions 2) We ask that a manuscript source file is provided at Revision. Please upload your manuscript file as a .doc, .docx, .rtf or .tex. 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If you did not draw the images, please provide (a) a link to the source of the images or icons and their license / terms of use; or (b) written permission from the copyright holder to publish the images or icons under our CC BY 4.0 license. Alternatively, you may replace the images with open source alternatives. See these open source resources you may use to replace images / clip-art: - https://commons.wikimedia.org Reviewers' comments: Reviewer's Responses to Questions Comments to the Authors: Please note here if the review is uploaded as an attachment. Reviewer #1: Manuscript: A Comprehensive Investigation of Intracortical and Corticothalamic Models of the Alpha Rhythm This manuscript provides a comparative analysis of neural population models (NPMs) used to simulate the alpha rhythms by focusing on four extensively studied models: Jansen-Rit (JR), Moran-David-Friston (MDF), Liley-Wright (LW), and Robinson-Rennie-Wright (RRW). The authors perform systemic comparison of the models' dynamics, including stability, parameter space, and bifurcation properties, in order to gain insights into the mechanisms underlying alpha generation. Major Comments 1. In Section 3.2.1, the table comparing parameter values across the four models is a key strength of this study. However, the parameter values differ significantly across these models. A rational for parameter translation in the discussion section open more avenue for translatability of results across different models. As an example, a discussions subsection on how can model outputs be normalized for direct comparison could help direct future research in this field? 2. The authors heavily rely on linear stability analysis and potential nonlinear behaviors (e.g., chaotic dynamics) and their implications are not explored. While linearization is a standard tool, the omission of nonlinear dynamics could overlook some critical dynamical phenomenon. This limitation should be discussed in the manuscript. Perhaps in the discussion section. 3. The authors mention that the "Mesoscopic activity is more challenging to measure directly". However, the LFP could be used as reasonable proxy for mesoscopic neural activity as it reflects the average synaptic activity of local neuronal population. Hence, a brief discussion of how LFPs could be used as a proxy for mesoscopic neural activity could provide more context. Typographical Errors 1. "top-down approach" is missing a hyphen in some locations. 2. Line 468 and 469: The words EC and EO are flipped in this sentence. Given that there is an attenuation of alpha activity during EO condition, the sentence should read: “….attenuated in EO compared to EC condition…” 3. Inconsistencies in references: For the reference on line 1054, the URL is written in a different font. Conclusion This manuscript is an impressive contribution to the modeling of alpha rhythms, offering a systematic and comparative framework for neural population models. And I believe addressing the above points will further enhance its impact and utility for the neuroscience community. Reviewer #2: The paper is an excellent compendium of four mathematical models used for studying alpha rhythms. The authors detail the comparative advantages/features of the models in considerable detail. The study will no doubt be of value to specialists in the field. It is a pity that their analysis does not propose the experiments that would be necessary to select which of the models is the "correct" one, which weakens their work somewhat. ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Richa Phogat Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. If there are other versions of figure files still present in your submission file inventory at resubmission, please replace them with the PACE-processed versions. Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols |
| Revision 1 |
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Dear Ms Bastiaens, We are pleased to inform you that your manuscript 'A comprehensive investigation of intracortical and corticothalamic models of the alpha rhythm' has been provisionally accepted for publication in PLOS Computational Biology. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Computational Biology. Best regards, Jonathan David Touboul Academic Editor PLOS Computational Biology Hugues Berry Section Editor PLOS Computational Biology *********************************************************** |
| Formally Accepted |
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PCOMPBIOL-D-24-01803R1 A comprehensive investigation of intracortical and corticothalamic models of the alpha rhythm Dear Dr Bastiaens, I am pleased to inform you that your manuscript has been formally accepted for publication in PLOS Computational Biology. Your manuscript is now with our production department and you will be notified of the publication date in due course. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Soon after your final files are uploaded, unless you have opted out, the early version of your manuscript will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting PLOS Computational Biology and open-access publishing. We are looking forward to publishing your work! With kind regards, Anita Estes PLOS Computational Biology | Carlyle House, Carlyle Road, Cambridge CB4 3DN | United Kingdom ploscompbiol@plos.org | Phone +44 (0) 1223-442824 | ploscompbiol.org | @PLOSCompBiol |
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