Peer Review History
| Original SubmissionNovember 22, 2024 |
|---|
|
PCOMPBIOL-D-24-02038 Lateralised memory networks explain the use of higher-order visual features in navigating insects PLOS Computational Biology Dear Dr. Filippi, Thank you for submitting your manuscript to PLOS Computational Biology. After careful consideration, we feel that it has merit but does not fully meet PLOS Computational Biology's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript within 30 days May 10 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at ploscompbiol@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pcompbiol/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A rebuttal letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Matthieu Louis Academic Editor PLOS Computational Biology Lyle Graham Section Editor PLOS Computational Biology Journal Requirements: 1) We ask that a manuscript source file is provided at Revision. Please upload your manuscript file as a .doc, .docx, .rtf or .tex. If you are providing a .tex file, please upload it under the item type u2018LaTeX Source Fileu2019 and leave your .pdf version as the item type u2018Manuscriptu2019. 2) Some material included in your submission may be copyrighted. According to PLOSu2019s copyright policy, authors who use figures or other material (e.g., graphics, clipart, maps) from another author or copyright holder must demonstrate or obtain permission to publish this material under the Creative Commons Attribution 4.0 International (CC BY 4.0) License used by PLOS journals. Please closely review the details of PLOSu2019s copyright requirements here: PLOS Licenses and Copyright. If you need to request permissions from a copyright holder, you may use PLOS's Copyright Content Permission form. Please respond directly to this email and provide any known details concerning your material's license terms and permissions required for reuse, even if you have not yet obtained copyright permissions or are unsure of your material's copyright compatibility. Once you have responded and addressed all other outstanding technical requirements, you may resubmit your manuscript within Editorial Manager. Potential Copyright Issues: i) Figure 1A. Please confirm whether you drew the images / clip-art within the figure panels by hand. If you did not draw the images, please provide (a) a link to the source of the images or icons and their license / terms of use; or (b) written permission from the copyright holder to publish the images or icons under our CC BY 4.0 license. Alternatively, you may replace the images with open source alternatives. See these open source resources you may use to replace images / clip-art: - https://commons.wikimedia.org Reviewers' comments: Reviewer's Responses to Questions Comments to the Authors: Please note that one of the reviews is uploaded as an attachment. Reviewer #1: This study showcases an elegant algorithm that lays out, how a processing of higher visual features may emerge by considering the hemispherical structure of the insect brain/mushroom bodies. Within the context of visual navigation in ants, this lays an important step considering visual features other than the holistic usage of the entire panorama. Here are my comments: Please add a more detailed description of your code to the readme. LL. 20-25: Just for the context within the range of naturally occuring behaviours in ants, where does the Lent study fit into the foraging process? Would this be mostly relevant for a "final approach", where the ant has almost reached the feeder and wants to find the very specific location? Or would this FPM also reflect a mechanism which could be applied at any section during route following, from the nest to the food location? LL. 191-198: The test shapes cannot be contained in the train shapes, because they do not have the same relative shape? For example, the Scalene shape triangle in 4B would only be contained in the train shape if it were, for example, scaled down by 20% in the x and y? LL. 327-336: Attention in Human EEG studies show increased activity in the hemisphere associated with the processing of the task relevant stimulus (Antonov et al 2020, "Too little, too late, and in the wrong place..."). In the context of this model, can you imagine a mechanism which up-/downregulates the processing of the task relevant segments? Furthermore, in visually complex scenes there will be many more shapes in the visual fields. Would this mechanism work with learnt shapes covering the entire panorama, or would this need some selective attention mechanism which depresses the computation of non-relevant shapes? L. 388: Maybe change "view" to "panoramic view"? So that the distinction between monocular and binocular is stronger. L. 436: Why Nkc = 25,000? In total 50,000. Other studies use less KCs for representing the whole MB. If you used similarly lower numbers, would that negatively effect the results of your model, and if so, how? L. 455: The crossover probability covers the entire contralateral vPN space, or only the space minus overlap? L. 514: The crossover is from the contralateral "eye"? In other words, 0-50% random pixels from the contralateral retina? S1 Fig: Above the plots, maybe show the training image like in S3. And lastly, i want to recapitulate the processing steps as i understood them; due to the manuscript-structure, the individual, but consecutive steps were a little too distributed for me. If there is anything missing/wrong in my recapitulation, maybe point out these steps more in detail. 1. Generation of images from the centre of the scene moving straight towards the feeder, so that the feeder would always be in the centre/origin of the image. These images represent the route memories. 2. Training the MB-Model using the route memories. 3. Presenting test-images to the model with different rotations, so that a novelty function for (most of) the panorama can be generated. For each shape, were these also presented from different places on the route, just like route memories? 4. Applying the Monte Carlo method to generate the most likely heading directions, dependent on the novelty sum and novelty difference. 5. Comparison with the behavioural data. Reviewer #2: see attachment. Reviewer #3: The authors revisit here the question of whether ants are able to use one specific higher-order visual feature, the "fractional position of mass" (FPM), to navigate. While this may seem like a rather niche or narrow question, the methodology shown in this work and its general message are very significant to the field: By applying a model constrained by the known anatomy and visual information processing in the ant brain, the authors demonstrate that encoding and recalling of an otherwise thought "higher-order" kind of information can actually be a purely emergent property of the brain's bilateral organization, rather than a specifically tuned, dedicated module. Their model reproduces the experimental findings from the Lent et al 2013 paper quite remarkably. I also appreciate that the authors contextualize their model of the Mushroom Bodies within the broader context of areas involved in navigation, the Central Complex and Lateral Accessory Lobes (paralleling the recently uncovered role of PFL2 cells in Drosophila). The approach shown in this paper and its main conclusion (that "a bilateral brain architecture allows ants to balance the quality of their memories in left and right hemispheres when navigating") clearly fit whithin the current state of research in the neurobiology of insect navigation, and represent in my opinion an overall coherent and convincing example of how modelling allows us to draw the link between complex behaviour and brain connectivity, making this work a strong contribution to the field. Some comments for the authors: "However, if the memory of the path were biased towards the first few views (due to some unknown mechanism), then we would expect that left and right novelties equate at the peak-defined direction, providing a tentative explanation for the bifurcation in colony behaviors." (l. 226 - 229) It would maybe be beneficial to quantify the change in information received by the ommaditia between two steps in the simulation, as one would expect a stronger change in the signal between two steps when the angular size of the object is greater (i.e. a smaller change in the familiarity between two steps at the start of the route compared to the end). Also, including some model results using more complex visual scenes and/or a more complex insect eye model might generate some very interesting predictions to be tested experimentally. ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: None Reviewer #3: Yes ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Fabian Steinbeck Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. If there are other versions of figure files still present in your submission file inventory at resubmission, please replace them with the PACE-processed versions. Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols
|
| Revision 1 |
|
PCOMPBIOL-D-24-02038R1 Lateralised memory networks may explain the use of higher-order visual features in navigating insects PLOS Computational Biology Dear Dr. Filippi, Thank you for submitting your manuscript to PLOS Computational Biology. While we feel that it has strong merit, it does not fully meet PLOS Computational Biology's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the final set of points raised during the review process. Please submit your revised manuscript within 30 days Jul 15 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at ploscompbiol@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pcompbiol/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A rebuttal letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Matthieu Louis Academic Editor PLOS Computational Biology Lyle Graham Section Editor PLOS Computational Biology Reviewers' comments: Reviewer's Responses to Questions Reviewer #1: All my comments have been adressed appropriately and improved my and any reader's understanding. Reviewer #2: The authors have significantly revised the paper and almost all of my previous comments have been addressed, except for two minor issues: 1. Regarding the clarification on tropotaxis: frankly I'm more confused as the response seems to distinguish 'using difference in bilateral signals' (tropotaxis as understood by the authors) vs 'balancing bilateral signals' (the approach of this paper). Technically/Mathematically, I don't see the difference between these two descriptions, and the paper talks about left-right difference being zero, seemingly interchangeably with left-right being balanced. 2. In the new supmaths5.pdf: (2a) Right before Equation (S5), please define \sigma clearly. I guess whoever reads this part will probabily guess it to be standard deviation, but of which distribution? Or, is it just a generic notation as \mathbb{E}? (2b) Right before Equation (S13), the assumption of the base rates X/T and Y/T being small is made. I'd appreciate it if the authors can elaborate more this assumption. There are also some other very minor issues such as spelling consistency issue (e.g., 'color' instead of 'colour' as the authors stated they want British spelling), which I don't think hinder the paper's quality at all. Similarly, I think the revised paper fulfills the criteria for publication, even not addressing the minor points I raised above, except for (2b), because PNs are not well known for sparse activation (as KCs). I suggest the authors making it clearer if this particular assumption is made base on biologically evidence or modelling assumption, or just for mathematical convenience -- All these options are acceptable in my opinion. ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Fabian Steinbeck Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. If there are other versions of figure files still present in your submission file inventory at resubmission, please replace them with the PACE-processed versions. Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols |
| Revision 2 |
|
Dear Mr Filippi, We are pleased to inform you that your manuscript 'Lateralised memory networks may explain the use of higher-order visual features in navigating insects' has been provisionally accepted for publication in PLOS Computational Biology. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Computational Biology. Best regards, Matthieu Louis Academic Editor PLOS Computational Biology Lyle Graham Section Editor PLOS Computational Biology *********************************************************** |
| Formally Accepted |
|
PCOMPBIOL-D-24-02038R2 Lateralised memory networks may explain the use of higher-order visual features in navigating insects Dear Dr Filippi, I am pleased to inform you that your manuscript has been formally accepted for publication in PLOS Computational Biology. Your manuscript is now with our production department and you will be notified of the publication date in due course. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Soon after your final files are uploaded, unless you have opted out, the early version of your manuscript will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting PLOS Computational Biology and open-access publishing. We are looking forward to publishing your work! With kind regards, Zsofia Freund PLOS Computational Biology | Carlyle House, Carlyle Road, Cambridge CB4 3DN | United Kingdom ploscompbiol@plos.org | Phone +44 (0) 1223-442824 | ploscompbiol.org | @PLOSCompBiol |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .