Peer Review History
| Original SubmissionMay 23, 2024 |
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Dear Mr Pires, Thank you very much for submitting your manuscript "The rules of multiplayer cooperation in networks of communities" for consideration at PLOS Computational Biology. As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. The reviewers appreciated the attention to an important topic. Based on the reviews, we are likely to accept this manuscript for publication, providing that you modify the manuscript according to the review recommendations. Please follow the suggestions of the two referres! Please prepare and submit your revised manuscript within 30 days. If you anticipate any delay, please let us know the expected resubmission date by replying to this email. When you are ready to resubmit, please upload the following: [1] A letter containing a detailed list of your responses to all review comments, and a description of the changes you have made in the manuscript. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out [2] Two versions of the revised manuscript: one with either highlights or tracked changes denoting where the text has been changed; the other a clean version (uploaded as the manuscript file). Important additional instructions are given below your reviewer comments. Thank you again for your submission to our journal. We hope that our editorial process has been constructive so far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments. Sincerely, Attila Csikász-Nagy Academic Editor PLOS Computational Biology Zhaolei Zhang Section Editor PLOS Computational Biology *********************** A link appears below if there are any accompanying review attachments. If you believe any reviews to be missing, please contact ploscompbiol@plos.org immediately: Reviewer's Responses to Questions Comments to the Authors: Please note here if the review is uploaded as an attachment. Reviewer #1: Authors study evolution dynamics of cooperation in multi-player interactions in mobile structured meta-populations, using methods from evolutionary game theory. They derive several general, analytical results for the limit of high home fidelity, where individuals interact mainly within their own communities. They then applied their results to a range of social/cooperation dilemma games and considered several reproduction/behaviour update rules. I find the paper well-written, the analyses thorough and done in a highly competent manner, and the findings important and impactful for the understanding of human cooperation in more realistic complex network settings. The literature of the evolution of cooperation is extensive but there is a lack of methodologies for analysing more realistic settings such as the ones studied in the current paper (i.e. structured meta-population with mobility). I believe the current work would make a significant contribution to this literature. The area of research is also strongly aligned with PLOS Computational Biology. Therefore, I would be happy to recommend publication of the paper in the present form. If there is a chance for revision, authors might consider the following optional suggestions: 1) The paper includes a large number of parameters — it might be useful to include a table (in the main text of Supporting Information) that summarises these parameters, including relevant information such as their ranges, etc. 2) The paper focuses on cooperation/social dilemma settings. It seems meta-population evolutionary game methods have been applied to several other contexts, e.g. AI governance and safety (see e.g. "Trust AI Regulation? Discerning users are vital to build trust and effective AI regulation." arXiv preprint arXiv:2403.09510 (2024), and "Both eyes open: Vigilant Incentives help Auditors improve AI Safety." Journal of Physics: Complexity (2024).), environmental monitoring (”Paradigm shifts and the interplay between state, business and civil sectors." Royal Society open science 3.12 (2016): 160753.) and healthcare investment ("Toward Understanding the Interplay between Public and Private Healthcare Providers and Patients: An Agent-based Simulation Approach." EAI Endorsed Transactions on Industrial Networks and Intelligent Systems 7.24 (2020): 166668.). I think the developed methods in the current paper can be very useful to study behavioural evolution in these emerging contexts. Reviewer #2: The authors examine the spread of cooperation in the network of communities. The communities consist of Q individuals and there are M of them arranged in a graph. With high probability, the individual interacts with his own community, however, with small probability (proportional to a parameter h) it might interact with other neighboring communities. Everyone plays some game (such as a prisoners' dilemma or other dilemmas) and obtains a payoff. The payoff influences the fitness of the individual. Then, one step of the Moran process (death-birth or birth-death) is performed. The authors compare the setting with the neutral case, where the payoff does not influence the fitness and one random individual fixates with probability 1/MQ. The paper shows the range of parameters where the PD (or any dilemma) leads to fixation probability of cooperation is above 1/MQ for h in the limit. The methods are technically challenging, but not surprising. The most important ingredient of the proof is to observe that the probability of cooperators conquering a community times the probability of spreading (which depends on fitness) is higher than the probability of defectors conquering a community and spreading. This result is obtained because of the "high home fidelity", i.e. the probability that one type fixates in the community happens before any between-community event. The authors show the results for 10 different dilemmas, six different update rules, and weak and strong selections. This is impressive, however the techniques to obtain the results are very similar. ---------- The manuscript has lot of strengths and studies an important topic, however, some changes are needed before I can recommend an acceptance. The model itself is fragile and the weaknesses and border cases are not properly addressed. Namely: the probability that an individual interacts with some other group is 1/(h+d) where d is the degree. This choice seems robust, but changing the probability to 1/h*1/d (with probability 1/h it "misses" his group and then chooses randomly) gives a very different dynamic. (more similar to the moran process). Therefore some strong justification is needed and some clarification about the limits of the model will also be helpful. A clearer explanation for Figure 1 is desirable: it seems that in the next step, the individual can move and then stay in a different community. (It's not true, but from the first reading it seems correct and this process seems more interesting.) The fitness of an individual (eq 3) makes me a bit uncomfortable. The model should simulate a discrete process. That means the payoff should be the realization of the interaction within the community (with current members), not the expectation over all possible configurations. Here, it might be desirable that everyone having the payoff computed from the original community. (The current choice looks more general, but it's not) Again, in eq (5), there could be more straightforward (with weight 1/(h+d) we spread into different communities). This again looks more general than it is and makes the model unnecessarily complicated. Later, some computations might be moved to SI, it would ease the reading, but I'm fine either way. ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: None Reviewer #2: Yes ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Figure Files: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Data Requirements: Please note that, as a condition of publication, PLOS' data policy requires that you make available all data used to draw the conclusions outlined in your manuscript. Data must be deposited in an appropriate repository, included within the body of the manuscript, or uploaded as supporting information. This includes all numerical values that were used to generate graphs, histograms etc.. For an example in PLOS Biology see here: http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001908#s5. Reproducibility: To enhance the reproducibility of your results, we recommend that you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols References: Review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. |
| Revision 1 |
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Dear Mr Pires, We are pleased to inform you that your manuscript 'The rules of multiplayer cooperation in networks of communities' has been provisionally accepted for publication in PLOS Computational Biology. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Computational Biology. Best regards, Attila Csikász-Nagy Academic Editor PLOS Computational Biology Zhaolei Zhang Section Editor PLOS Computational Biology *********************************************************** |
| Formally Accepted |
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PCOMPBIOL-D-24-00868R1 The rules of multiplayer cooperation in networks of communities Dear Dr Pires, I am pleased to inform you that your manuscript has been formally accepted for publication in PLOS Computational Biology. Your manuscript is now with our production department and you will be notified of the publication date in due course. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Soon after your final files are uploaded, unless you have opted out, the early version of your manuscript will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting PLOS Computational Biology and open-access publishing. We are looking forward to publishing your work! With kind regards, Anita Estes PLOS Computational Biology | Carlyle House, Carlyle Road, Cambridge CB4 3DN | United Kingdom ploscompbiol@plos.org | Phone +44 (0) 1223-442824 | ploscompbiol.org | @PLOSCompBiol |
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