Peer Review History

Original SubmissionAugust 14, 2023
Decision Letter - Thomas Serre, Editor, Tianming Yang, Editor

Dear Dr Wurm,

Thank you very much for submitting your manuscript "Surprise-minimization as a solution to the structural credit assignment problem" for consideration at PLOS Computational Biology. Please accept my sincere apologies for the delay in processing the manuscript. We have unfortunately encountered difficulties in securing the reviewers until recently.

As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by two independent reviewers. In light of the reviews (below this email), we would like to invite the resubmission of a significantly-revised version that takes into account the reviewers' comments.

We cannot make any decision about publication until we have seen the revised manuscript and your response to the reviewers' comments. Your revised manuscript is also likely to be sent to reviewers for further evaluation.

When you are ready to resubmit, please upload the following:

[1] A letter containing a detailed list of your responses to the review comments and a description of the changes you have made in the manuscript. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out.

[2] Two versions of the revised manuscript: one with either highlights or tracked changes denoting where the text has been changed; the other a clean version (uploaded as the manuscript file).

Important additional instructions are given below your reviewer comments.

Please prepare and submit your revised manuscript within 60 days. If you anticipate any delay, please let us know the expected resubmission date by replying to this email. Please note that revised manuscripts received after the 60-day due date may require evaluation and peer review similar to newly submitted manuscripts.

Thank you again for your submission. We hope that our editorial process has been constructive so far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments.

Sincerely,

Tianming Yang

Academic Editor

PLOS Computational Biology

Thomas Serre

Section Editor

PLOS Computational Biology

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Reviewer's Responses to Questions

Comments to the Authors:

Please note here if the review is uploaded as an attachment.

Reviewer #1: The review is uploaded as an attachment.

Reviewer #2: Wurm et al. studied neurocomputational mechanism of discovering decision-outcome mapping when it is hidden and needs to be discovered. For this purpose, the authors designed a task in which participants made two separate two-armed bandit choices and received separate outcomes, while the link between each decision and outcome was unknown and had to be discovered. The authors showed that participants learnt the task. They then designed a computational model based on competing policies: two different policies competed for explaining the behaviour. The policy that led to the smaller surprised had more influence on behaviour. The influence of each policy was determined by comparing the surprise of each policy. Using EEG, the authors indicated that neural activity was correlated with surprise obtained from the two competing policies (though it was greater for the correct policy). They also showed neural correlates of the difference between the surprise signals obtained from the two policies.

The study is interesting, and the research question is very timely. The manuscript is in general well-written, however I had trouble working out some behavioural analyses because of the lack of clarity in the way that the analyses were conducted and in the representation of the data. More importantly, I believe the authors do not provide adequate evidence for the “surprise minimisation” account which they try to advance. In addition, some of the statistical procedure seem incorrect to me. Please see my comments below.

1) In their introduction and discussion and the title of the paper, the authors suggest that surprise-minimisation is a solution and mechanism for solving the task. Their evidence for this account is the neural correlates of surprise that the study showed using EEG. I understand why the authors think “surprise minimisation” can be used to explain their results, because of the free energy principle. But if the authors wish to do so, they need to provide evidence that “surprise minimisation” is what the brain and the participants were doing for solving this task. The authors reviewed some articles related to the free energy principle. The free energy principle is not falsifiable (suggested by others and recently by its advocates too, please see https://www.sciencedirect.com/science/article/pii/S037015732300203X). So, my question is, how does this study provide evidence for the statement that the surprise minimisation is the solution for solving this task?

I recommend the authors to focus on the computational role of surprise to solve the task. Obviously, it is up to the authors to speculate about the consistency of their results with free energy principle, but it should not prevent them from presenting a more detailed computational account of their data. Critically, the surprise computed for each model can be used as the evidence in favour of each policy (as the authors compute). This is not the first study that investigates the effect of surprise in learning and decision making. Some other studies have investigated how surprise can be used to guide behaviour. For example, Harsmaa et al. Moceluar Psychiatry 2020 have studied the effect of surprise. In addition, Mahmoodi et al. BioRxiv 2023 have studied latent cause inference using surprise as a measure of solving the latent cause inference task. I think the authors should take a similar approach and discuss the relevant literature like those mentioned above. However, if they want to insist on “surprise minimisation” as it is suggested by the free energy principle, they have to provide evidence for their account, a feat which I’m afraid has been evading the advocates of the theory and eventually led to concede it is not a falsifiable theory.

By investigating the computational role of surprise in the task, the authors can ask more detailed and informative questions. For example, the difference in surprise signal (separately for each choice) can be used on the next trial as the “evidence signal”-- the probability that one policy is better than the other -- to guide the choice. The authors should run this analysis. The existence of such a signal indicates that the surprise signal is used to compute the likelihood that each policy is right. It will offer a computational role for surprise, similar to recent studies (e.g., Mahmoodi et al. BioRxiv 2023).

2) I found it very difficult to work out what Figure 2A-B and 3A are supposed to communicate. In figure 2, we have win/loss on x-axis, and we also have grey/white colours, but is not clear what each colour is. In addition, x-axis label indicates it is relevant outcome. moreover, on panel 2B there is a label at the top right which reads (win/loss for grey and white colours). How’s this labelling different from win/loss on x-axis?

3) As far as I understood, there is an effect of irrelevant win on stay probability. Is it not a failure of credit assignment? It indicates that if we you receive a good outcome, even it is irrelevant, you are more likely to repeat your current policy. This is a confusion effect. How do the authors explain it?

4) There is a study which indicates that the permutation test cannot be used to make any statement about the onset and offset of an effect (https://onlinelibrary.wiley.com/doi/10.1111/psyp.13335). I strongly urge the authors to report whether their procedure is consistent with this study. I am baffled by the significance of the red curve in Figure 5B, right panel. It does not seem significant to me even without applying any correction. The significance line indicates significance even for areas which the error bar almost overlaps with the zero line. How is that possible? I think the authors made the unwarranted interpretations of the permutation test that the study that I referred to above has addressed. If this is the case, the authors should correct their procedure.

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Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: Yes: Jae Hyung Woo

Reviewer #2: No

Figure Files:

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org.

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To enhance the reproducibility of your results, we recommend that you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols

Attachments
Attachment
Submitted filename: Review_PCOMPBIOL-D-23-01284.pdf
Revision 1

Attachments
Attachment
Submitted filename: PCOMPBIOL_rebuttal_v4.docx
Decision Letter - Thomas Serre, Editor, Tianming Yang, Editor

Dear Dr Wurm,

Thank you very much for submitting your manuscript "Surprise-minimization as a solution to the structural credit assignment problem" for consideration at PLOS Computational Biology. As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. The reviewers appreciated the attention to an important topic. Based on the reviews, we are likely to accept this manuscript for publication, providing that you modify the manuscript according to the review recommendations.

Please prepare and submit your revised manuscript within 30 days. If you anticipate any delay, please let us know the expected resubmission date by replying to this email.

When you are ready to resubmit, please upload the following:

[1] A letter containing a detailed list of your responses to all review comments, and a description of the changes you have made in the manuscript. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out

[2] Two versions of the revised manuscript: one with either highlights or tracked changes denoting where the text has been changed; the other a clean version (uploaded as the manuscript file).

Important additional instructions are given below your reviewer comments.

Thank you again for your submission to our journal. We hope that our editorial process has been constructive so far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments.

Sincerely,

Tianming Yang

Academic Editor

PLOS Computational Biology

Thomas Serre

Section Editor

PLOS Computational Biology

***********************

A link appears below if there are any accompanying review attachments. If you believe any reviews to be missing, please contact ploscompbiol@plos.org immediately:

Reviewer's Responses to Questions

Comments to the Authors:

Please note here if the review is uploaded as an attachment.

Reviewer #1: All of my comments were addressed adequately, and I appreciate the authors' efforts on re-running the analyses and fitting new models. Overall I think the paper has been strengthened. Below are just additional minor comments and follow-ups to the authors' response.

Comment 1: Thank you for checking this analysis. I agree that the new figure adds marginal value and better be excluded from the manuscript. Although, I find it very interesting that the psychometric curve for irrelevant mapping (red) seems to have overall stay bias (as the middle point at value of 50 seems to have over chance level of staying). Just wondering if the authors have insight to this effect?

For the average crossing rate (17.6 flips per 100 trials, stable for 5.7 trials) -- I think this detail is worth reporting and can be mentioned in the Methods for the task details.

Comment 2: Thank you for testing this additional models. I see how the additional starting bias is not helping with the fit, although decreasing the -log-likelihood. Table S1 is clear.

Figure 3E is also nice. A very minor styling preference: totally up to your choice, but since the third panel already says "Surprise" the y-label could be written as |δ|, consistent with the top panel. Y-label for Evidence generation could be Δ as well.

Also in the figure caption, it feels a little awkward that the order of explanation is from bottom to top panels, instead of top to bottom. Also there is a typo: "middle pane."

Comment 3: Thank you for testing this hypothesis. The results are interesting on their own, as they suggest that the brain is encoding the signal robustly. The new EEG analysis also shows nice separation between feedback and response periods. I refer additional comments for it to Reviewer 2.

Other additional comments:

- Typo in Eq. 4: dd_i should be d_i?

- Just caught this but in Eq. 9, the arbitration weight for the incorrect option should be (1-logit^-1(ω)) instead of logit^-1(1-ω), according to your implementation and the codes. Note that according to current formulation in Eq. 9, the two sigmoids (for correct & incorrect arbitration weights) are symmetric around ω of 0.5, not 0.

- Relatedly for Eq. 12, shouldn't the decision value for incorrect (D_incorrect) be multiplied with (1-logit^-1(ω)), instead of the current formulation which multiplies arbitration weight for "correct" decision value?

- Line #927: (Eq. 13) → (Eq. 14)

Reviewer #2: The authors have addressed most of my previous comments. However please see my remaining concern below.

I still find Figure 2A-B and 3A-C very confusing. For example, in Figure 2A we have win and loss on the x-axis. On the top right corner of Figure 2B, win and loss are color coded with dark and bright colours. On top of the color code it reads irrelevant outcome. I find these details very confusing. Can you please clarify these panels?

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Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Jae Hyung Woo

Reviewer #2: No

Figure Files:

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org.

Data Requirements:

Please note that, as a condition of publication, PLOS' data policy requires that you make available all data used to draw the conclusions outlined in your manuscript. Data must be deposited in an appropriate repository, included within the body of the manuscript, or uploaded as supporting information. This includes all numerical values that were used to generate graphs, histograms etc.. For an example in PLOS Biology see here: http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001908#s5.

Reproducibility:

To enhance the reproducibility of your results, we recommend that you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols

References:

Review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript.

If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

Revision 2

Attachments
Attachment
Submitted filename: RebuttalLetter_PLOSCB_round2_v2.docx
Decision Letter - Thomas Serre, Editor, Tianming Yang, Editor

Dear Dr Wurm,

We are pleased to inform you that your manuscript 'Surprise-minimization as a solution to the structural credit assignment problem' has been provisionally accepted for publication in PLOS Computational Biology.

Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests.

Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated.

IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript.

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Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Computational Biology. 

Best regards,

Tianming Yang

Academic Editor

PLOS Computational Biology

Thomas Serre

Section Editor

PLOS Computational Biology

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Formally Accepted
Acceptance Letter - Thomas Serre, Editor, Tianming Yang, Editor

PCOMPBIOL-D-23-01284R2

Surprise-minimization as a solution to the structural credit assignment problem

Dear Dr Wurm,

I am pleased to inform you that your manuscript has been formally accepted for publication in PLOS Computational Biology. Your manuscript is now with our production department and you will be notified of the publication date in due course.

The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript.

Soon after your final files are uploaded, unless you have opted out, the early version of your manuscript will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers.

Thank you again for supporting PLOS Computational Biology and open-access publishing. We are looking forward to publishing your work!

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Zsofia Freund

PLOS Computational Biology | Carlyle House, Carlyle Road, Cambridge CB4 3DN | United Kingdom ploscompbiol@plos.org | Phone +44 (0) 1223-442824 | ploscompbiol.org | @PLOSCompBiol

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