Peer Review History
| Original SubmissionMarch 4, 2022 |
|---|
|
Dear Dr. Louie, Thank you very much for submitting your manuscript "Asymmetric and adaptive reward coding via normalized reinforcement learning" for consideration at PLOS Computational Biology. As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. In light of the reviews (below this email), we would like to invite the resubmission of a significantly-revised version that takes into account the reviewers' comments. I enjoyed reading the paper, and the reviewer comments are pretty straightforward. One of the main questions is comparison to other models. You don't need to go on a wild goose chase exploring many different non-linear models, but it's important to convey to the reader more clearly what the space of possibilities is and why this particular model might be a good choice over other possibilities. We cannot make any decision about publication until we have seen the revised manuscript and your response to the reviewers' comments. Your revised manuscript is also likely to be sent to reviewers for further evaluation. When you are ready to resubmit, please upload the following: [1] A letter containing a detailed list of your responses to the review comments and a description of the changes you have made in the manuscript. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. [2] Two versions of the revised manuscript: one with either highlights or tracked changes denoting where the text has been changed; the other a clean version (uploaded as the manuscript file). Important additional instructions are given below your reviewer comments. Please prepare and submit your revised manuscript within 60 days. If you anticipate any delay, please let us know the expected resubmission date by replying to this email. Please note that revised manuscripts received after the 60-day due date may require evaluation and peer review similar to newly submitted manuscripts. Thank you again for your submission. We hope that our editorial process has been constructive so far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments. Sincerely, Samuel J. Gershman Deputy Editor PLOS Computational Biology *********************** Reviewer's Responses to Questions Comments to the Authors: Reviewer #1: Thanks for the opportunity to review the paper titled “Asymmetric and adaptive reward coding via normalized reinforcement learning”. The paper proposes a divisive normalization model of subjective value to explain important processes characterising reinforcement learning. Simulations aim at demonstrating that the non-linear value function proposed by the model can explain (i) asymmetries between positive and negative learning rates and (ii) data about dopaminergic neurons. Overall, the paper is clearly written, and its contribution is timely and valuable. Below, please see some suggestions on how to improve the paper further: Major points: The author should clarify the specific contribution of the paper to the literature. It seems to me that the idea of proposing a reference-dependent sigmoid function (albeit in a different form) to describe subjective value is not novel (e.g., Woodford, 2012; Rigoli, 2019). The author should discuss this literature and clarify what the present paper adds to it. In my opinion, while previous literature adopting similar sigmoid models focuses on reference effects, the novel contribution of the paper is to explore the implications of a sigmoid value function in the context of RL; and show how this can explain (i) reported asymmetries in learning rate and (ii) recent data about dopamine function. Does the author agree on this interpretation? In any case, it would be helpful to clarify the precise contribution of the paper. Although the paper hints to reference effects in shaping the value function (also consistent with the literature on normalization mentioned in the introduction), the nature of these effects is not explained. Specifically, the paper is silent about where the parameters sigma and n come from. Do they depend on the property of the distribution of rewards (e.g., sigma being an average and n being an index of variability)? I think that an in-depth analysis of this aspect is not necessary here, as the main points of the paper emerge clearly enough as it is. Yet, a short clarification of this important aspect of the model would be beneficial. Relatedly, given that the focus is on RL, the discussion might briefly speculate on how the parameters are themselves acquired via learning. As argued above, the simulation described in fig. 3 appears crucial to me, as it reflects one of the main contributions of the paper (explaining asymmetries in learning rates as arising from non-linear value functions). However, I am not sure how robust the result that sigma inversely correlates with risk aversion is. Does this also depend on the range of rewards simulated? I suggest to vary the reward distribution (keeping the parameters fixed) in different simulations and show what happens. In general, a few other simulations on this point (e.g., based on empirical studies conducted by Palminteri’s lab or Frank’s lab) would make the argument more convincing. Relatedly, what is the role of the parameter n in risk sensitivity? Regarding the paragraph starting with “Recent work shows that empirical dopamine responses exhibit…”, I found the description of the simulation unclear. Please provide all the relevant information about this simulation in this paragraph. Minor points: Fig 1 b: please report the values of sigma and n adopted in the simulation. Line 100: I think it should be “asymmetric prediction errors” “Intuitively, these apparent learning rates arise because fitting with the standard RL model (Eqn. 4) approximates bipartite linear regression on the nonlinear value function”. This sentence is not clear to me. Regarding the paragraph “Moreover, the intrinsic RPE asymmetry of NRL model..” the author nicely draws a parallel between the simulation’s results and the main four findings reported by Dabney at al (2020) outlined previously. It would help to make the parallel more explicit. References Rigoli, F. (2019). Reference effects on decision-making elicited by previous rewards. Cognition, 192, 104034. Woodford, M. (2012). Prospect theory as efficient perceptual distortion. American Economic Review, 102(3), 41-46. Reviewer #2: Review of Asymmetric and adaptive reward coding via normalized reinforcement learning by Louie. Summary In the present study, the author describes behavioral and computational implications of using non-linear reinforcement learning (RL) models. The author characterized a RL model implementing a non-linear value function of reward via a divisive normalization computation. The author shows that this non-linear specification can produce asymmetrical prediction errors coding and then explain both behavioral phenomena such as attitudes toward risk and computational mechanisms underlying distributional learning in the brain. The paper is well written, clear, and concise, and the question raised by the author is of prime interest. The link made between non-linear value functions and updating asymmetry in linear models with multiple learning rates is particularly interesting and promising, and in making that link and describing its computational implication, the study fulfils its goal perfectly. The paper is very informative, and I enjoyed reading it. On a side note, it is not clear how the model, in its current version, will be useful to analyze behavior in future studies. The later can produce relevant effects observed in humans but the lack of clear view on what could represent (cognitively) or determine the semisaturation parameter is problematic. It is not obvious either whether the model can fit reliably human behavior and make actual predictions about the later. Major comments #1 Alternative non-linear models The non-linear valuation in the model can produce asymmetric prediction errors coding, but so would do other nonlinear, convex or concave, utility functions. For instance, another function that is convex then concave (like the present function for n≥2) is the prospect theory valuation function, which is convex below the reference point and concave above. Moving the reference point would then produce similar effects as moving the semisaturation parameter in the present model. Beyond its explanatory power at the neural level, could author explain the advantages of using the present model over other non-linear ones? I understand why the divisive normalization is used here but is it, in the present version, a good behavioral model? Regarding the prospect theory function, moving arbitrarily the reference point to account for various behaviors, without clear assumption about how it is set, would not make much sense. And the same could be said with moving the semisaturation parameter in the present model, which has furthermore a less clear definition. Could the author comment on this point? #2 Interpretation of the semisaturation parameter Related to point #1, I find it hard to grasp the meaning of the semisaturation parameter, at the behavioral level. In the simulations presented in the paper, it seems that its only goal is to place the concave or convex portion of the valuation curve adequately on the range of objective values in order to generate a positive or a negative asymmetry in prediction error coding respectively. In the same way and as an example, does it make sense to define the semisaturation parameter as being twice as large as the upper bond of the range of objective value in the considered environment (e.g., the choice task described here)? 3# On the use of the model in behavioral studies It is not clear from the paper how well the model could fit behavioral data and how well the parameters could be recovered from simulated data. For instance, in the behavioral part of the paper, the model is used to generate data in a choice task, could the simulated data be reasonably well fitted by the generative model and the parameters of the latter well recovered? Minor comments #1 Figure 1b - parameters It would be useful for readers to make explicit parameters that have been used in figure 1b. #2 Figure 3a parameters Similarly, it would be useful for readers to know which parameters have been used to generate the risk-seeking and risk-averse agents from figure 3a. We know the range of values that has been used for all agents but not the values of these two particular cases. ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Francesco Rigoli Reviewer #2: No Figure Files: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Data Requirements: Please note that, as a condition of publication, PLOS' data policy requires that you make available all data used to draw the conclusions outlined in your manuscript. Data must be deposited in an appropriate repository, included within the body of the manuscript, or uploaded as supporting information. This includes all numerical values that were used to generate graphs, histograms etc.. For an example in PLOS Biology see here: http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001908#s5. Reproducibility: To enhance the reproducibility of your results, we recommend that you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols |
| Revision 1 |
|
Dear Dr. Louie, We are pleased to inform you that your manuscript 'Asymmetric and adaptive reward coding via normalized reinforcement learning' has been provisionally accepted for publication in PLOS Computational Biology. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Also please note a couple of minor suggestions from Reviewer 1. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Computational Biology. Best regards, Samuel Gershman Deputy Editor PLOS Computational Biology *********************************************************** Reviewer's Responses to Questions Comments to the Authors: Reviewer #1: Thanks again for the opportunity to review the paper. The authors have addressed all the points I highlighted, and the paper appears as a valuable contribution to the literature. I have two further minor suggestions: - the sentence "the adaptation of human valuation behavior is captured by a normalization mechanism with an equivalent σ averaging past rewards (38)" sounds a bit overstated; I suggest to add something like "at least in some circumstances" - in the response to reviewers, the authors mention the empirical literature about asymmetrical RL, and argue that an analysis of this is beyond the scope of the manuscript - this is something left for future work. The authors' reply sounds reasonable. However, I think it is preferable to briefly acknowledge this in the discussion (and potentially briefly speculate about how the model could capture some of the main findings) Reviewer #2: I thank the author for their pertinent and precise answers to my comments. The author performed new analyses and added new paragraphs to the manuscript, improving further an already very interesting study. ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: None Reviewer #2: Yes ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Francesco Rigoli Reviewer #2: No |
| Formally Accepted |
|
PCOMPBIOL-D-22-00336R1 Asymmetric and adaptive reward coding via normalized reinforcement learning Dear Dr Louie, I am pleased to inform you that your manuscript has been formally accepted for publication in PLOS Computational Biology. Your manuscript is now with our production department and you will be notified of the publication date in due course. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Soon after your final files are uploaded, unless you have opted out, the early version of your manuscript will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting PLOS Computational Biology and open-access publishing. We are looking forward to publishing your work! With kind regards, Zsofia Freund PLOS Computational Biology | Carlyle House, Carlyle Road, Cambridge CB4 3DN | United Kingdom ploscompbiol@plos.org | Phone +44 (0) 1223-442824 | ploscompbiol.org | @PLOSCompBiol |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .