Fig 1.
Turing Way (TW) reproducibility classes [7] ordered in a hierarchy based on generality, similar to Gundersen and Kjensmo [8].
Fig 2.
Schematic diagram of the provenance of a QIIME 2 Visualization.
A: An example of a QIIME 2 visualization illustrating the taxonomic composition of several samples. B: The directed, acyclic graph (DAG) tracing the history of the panel A visualization from initial data import into QIIME 2 through the creation of the visualization (denoted with an asterisk). This DAG can be used for analytical interpretation or publication, and serves as the input to Provenance Replay. Additional detail is provided in panel C on the nodes included in the dashed box. C: A DAG describing the inputs and outputs of the ‘action’ node highlighted in gray. D: “Action details,” captured during the execution of the node highlighted in gray. Some data collected as action details, such as information about the computational environment where the action was run, is not presented in this schematic for readability, but can be observed in the provenance of either of the two QIIME 2 results included in Supporting Information S1. The node selected for panel D was arbitrarily chosen.