Fig 1.
Breast cancer protein-protein interaction network used as example network on NDExEdit.
It shows the interactome of the union of all high-confidence PPIs detected across breast cell lines MCF7, MDA-MB-231, and MCF10A. This network is available on NDEx by the UUID: e89ad762-ab4b-11ea-aaef-0ac135e8bacf.
Fig 2.
Discrete mapping for node properties.
New discrete mappings can be created, existing mappings are shown for the “Bait” property of several visual properties. This includes mappings to colors, numerical and concrete string values.
Fig 3.
The score values of the edges are mapped using boundary values, to which colors and numeric values can be assigned. Mapping properties and boundaries can be deleted or new ones added.
Fig 4.
Continuous mapping of values of the edge attribute “diff_score”.
A) Histogram for the “diff_score” attribute values. B) Continuous mapping of the values to a color gradient with marked boundary values. C) Mapping graph for “diff_score” values to edge width.
Fig 5.
Available graph layout options.
Different layout algorithms determine the position of each node, and therefore the overall representation of the network.
Fig 6.
A rapid change of the color at the threshold is only hardly possible with the current mapping types.