Table 1.
A list of MEME Suite tools that are currently included in memes.
Fig 1.
PWMs of discovered motifs in Decreasing (A) and Increasing (B) sites. C,D Pearson correlation heatmaps comparing similarity of Decreasing (C) and Increasing (D) motifs.
Fig 2.
Representative plots generated by view_tomtom_hits showing the top hit for motifs discovered in decreasing (A) and increasing (B) peaks.
Table 2.
Summary of all TomTom matches for denovo motifs discovered in E93 responsive ChIP peaks.
Fig 3.
A heatmap of the -log10(adj.pvalues) from AME enrichment testing within increasing and decreasing sites.
Fig 4.
A. Stacked barplot showing fraction of each chromatin response category containing E93 motif matches. B. PWMs generated from E93 motif sequences detected in each chromatin response category. C. Boxplot of FIMO Score for each E93 motif within each chromatin response category. Outliers are plotted as distinct points.