Fig 1.
Flowchart of Salmon quantification followed by tximeta.
The quantification and import pipeline results in a SummarizedExperiment object with reference transcript provenance metadata added by tximeta (see Design and Implementation). The SummarizedExperiment object contains estimated counts and other relevant metadata, and can be used with downstream statistical packages.
Table 1.
Comparison of tximeta to related software.
Table 2.
Pre-computed reference transcripts checksums as of early 2020.