Table 1.
Apps currently available in DSAIDE.
Fig 1.
Main menu of the DSAIDE package.
DSAIDE, Dynamical Systems Approaches to Infectious Disease Epidemiology.
Fig 2.
Graphical interface for the reproductive number app.
Inputs are on the left; outputs in the form of graphs and useful numbers (e.g., maximum of each compartment during the simulation) are provided on the right. Below this is the documentation for the app; an example is shown in the next figure. S, Susceptible; I, Infected; R, Recovered.
Fig 3.
Documentation tabs for the environmental transmission app.
ODE, Ordinary Differential Equation; SIR, Susceptible-Infected-Recovered.
Fig 4.
Dynamics of susceptible, infected, and recovered during a single outbreak, obtained by a direct call to the simulate_introduction() function.
Fig 5.
Peak of the outbreak as a function of recovery rate.
This plot is obtained by wrapping the simulate_introduction() function into a loop for different values of the recovery time parameter.
Fig 6.
Peak of the outbreak as a function of waning immunity.