Table 1.
List of reference sets.
Fig 1.
GINOM computation time experiments with simulated data.
Left: Computation time v. L with fixed values of N = 5 and n = 2540. Right: Computation time v. N on chromosome 19 (L = 5.9 × 107) with n = 2540.
Table 2.
GINOM parameter estimation performance on simulated data.
Fig 2.
Histograms of estimated model parameter values.
The components of were computed from 1000 simulations of sample size n = 2540.
Table 3.
GINOM model selection performance for simulated data.
Table 4.
GINOM model selection on lung cancer L1 somatic retrotransposition data.
Fig 3.
Primary effects of lung cancer somatic L1 retrotransposition.
The results were output from GINOM model selection under BIC penalty.