A multimodal spatial atlas of transcriptomic, morphological, and electrophysiological cell type densities in the mouse brain
Fig 2
Regional transcriptomic cell counts in the extended 3D atlas format (566, 320, 456).
Sagittal (y = 200) and coronal (x = 300) sections from the A. extended and improved CCFv3 annotation volume (The annotation colors match those in the AIBS reference atlas.), B. regional cell counts with Nissl granularity, C. regional neuron counts (averages), and D. regional non-neuronal counts (averages). Colorbar shows cell numbers in number of cells / mm3 for panel B. E. Sagittal (y = 200) and coronal (x = 300) sections of an excitatory cell type at 4 different hierarchies (class, subclass, supertype, cluster). F. Inhibitory cell type examples at different hierarchical levels. G. Astrocytic cell type examples at different hierarchical levels. H. Oligodendrocytic cell type examples at different hierarchical levels. Colorbars (E-H) show cell numbers for the first cell type in the row. Resolution: 25 μm3 voxel size.