Degradation graphs reveal hidden proteolytic activity in peptidomes
Fig 7
Robustness of graph identification.
Parameter sweeps across learning rates and training epochs were used to assess the stability of degradation graph inference for the UMOD dataset (a) and the HBA infection dataset (b). Heatmaps show the underestimation ratio (Δ), final mean squared error, and the stability of the top peptides and edges when ranked of inflow and flow respectively, measured as the percentage of overlap across replicate runs.