STARCall integrates image stitching, alignment, and read calling to enable scalable analysis of in situ sequencing data
Fig 5
STARCall resource requirements.
A) Performance metrics for a full run of STARCall on image set 1.1. Shown is the number of jobs running colored by their section of the pipeline (top), the percent of CPU usage measured (middle), and the resident set size (RSS) memory usage in gigabytes (bottom). B) Performance metrics for ConStitch, the package that performs stitching and alignment in STARCall, compared to ASHLAR. The percent of CPU usage (top) and RSS memory usage (bottom) over time are shown. C) The same performance metrics as in (B) shown for just the read calling portion of STARCall, compared to the Feldman et al. [4] pipeline.