OneProt: Towards multi-modal protein foundation models via latent space alignment of sequence, structure, binding sites and text encoders
Table 3
Performance comparison of OneProt, SaProt-LoRa, SaProt, ProTrek, ESM, and OpenFold on five diverse downstream biological protein tasks: ThermoStability (regression), HumanPPI, Metal Ion Binding, DeepLoc Binary (binary classification) and DeepLoc Subcellular (multiclass classification), using Spearman correlation for ThermoStability, accuracy (ACC) and Area Under the Reciever Operating Curve (AUC) for the remaining tasks.