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From ideal to practical: Heterogeneity of student-generated variant lists highlights hidden reproducibility gaps

Fig 1

Steps of the pipelines.

Each pipeline has trimming and duplicate marking steps. The rest of the steps have alternative options. Each group created 12 VCF documents (2 aligners, 2 options for base recalibration, three variant calling algorithms).

doi: https://doi.org/10.1371/journal.pcbi.1013552.g001