OmnibusX: A unified platform for accessible multi-omics analysis
Fig 2
Main interface of OmnibusX for dataset exploration.
The platform supports synchronized visualization of diverse data types, including cell embeddings (e.g., UMAP/t-SNE), H&E-stained tissue sections, and multiplexed immunofluorescence (IF) images. Users can interactively query gene expression across multiple omics modalities (e.g., RNA, ATAC, ADT), visualize results on embeddings, and manage or assign cell labels using built-in annotation tools. The interface is a central hub for intuitive data exploration, offering immediate access to downstream analytical modules, including compositional analysis, differential expression, enrichment, heatmap, trajectory inference, genome browser, clonotype analysis, etc.