SBMLNetwork: A framework for standards-based visualization of biochemical models
Fig 6
Reaction Alignment of the Tricarboxylic Acid (TCA) Cycle Network.
Generated using the Python script in S1 Listing, SBMLNetwork’s arrangement feature positioned the pyruvate dehydrogenase reaction vertically at the top and arranged the core TCA-cycle reactions in a circular layout to emphasize pathway flow and its cyclic nature. Metabolites are shown in yellow, cofactors in blue, and reactions in green to distinguish the different components of the pathway.