SBMLNetwork: A framework for standards-based visualization of biochemical models
Fig 3
Original vs. SBMLNetwork-generated repressilator pathway in SBGN format.
The left panel shows the original repressilator pathway from [24]; the right panel shows the same pathway rendered by SBMLNetwork, which embeds SBGN-compliant visualization data directly into the SBML model. This comparison highlights SBMLNetwork’s capability to generate high-quality, SBGN-compliant visualizations for models featuring distinct geometric shapes for reaction centers, explicit depiction of empty species, and flexible arrowhead representations for reaction curves.