A Discretized Overlap Resolution Algorithm (DORA) for resolving spatial overlaps in individual-based models of microbes
Fig 6
Simulation of colony growth at a scarce nutrient concentration of 1 mg/L.
(A) Shows snapshots of the simulation at various time points using the DORA algorithm. (B) Displays snapshots from the simulation at different time points using the kd-tree approach. (C) Compares the resolution time step at each iteration of the simulation (on the y-axis) with the experiment time (on the x-axis) for DORA (in green) and the kd-tree (in magenta). (D) Shows the evolution of the overlap ratio over time when using the DORA algorithm.