Accounting for reporting delays in real-time phylodynamic analyses with preferential sampling
Fig 4
Seven-day moving averages of the mean relative deviation, mean percent coverage, and mean interval width by the 95% Bayesian credible intervals, for each real-time phylodynamic strategies to infer the effective population size in each simulation scenario with preferential sampling (PS) and reporting delays in the observed data.
Real-time inference was performed with the Bayesian nonparametric phylodynamic reconstruction (BNPR) model, BNPR PS model, and with the delay-aware BNPR PS model with 500 simulations per scenario.