Accounting for reporting delays in real-time phylodynamic analyses with preferential sampling
Fig 2
Simulation details: effective population trajectories (upper left plot), reporting probability by sampling time (upper right plot) obtained from the Washington state data, and histograms of sampling times from the last simulation of in each simulation scenario, approximately 1500 samples each, colored by whether sample was reported by time of analysis (bottom plots).
Each simulation scenario had a different time zero, i.e., time of latest sample (dashed lines). The earliest sampling time in each scenario was at the same point in the trajectory (dotted line).