ENQUIRE automatically reconstructs, expands, and drives enrichment analysis of gene and Mesh co-occurrence networks from context-specific biomedical literature
Table 3
Effect of relevant covariates on quality indicators of ENQUIRE’s gene entity recognition.
We evaluated the effect of corpus size (input), Reactome pathway size (number of genes to be retrieved), and average gene-gene co-occurrence per PMID, using Spearman’s correlation coefficients, for each measure. Bold indicates significant correlations, based on adjusted, Edgeworth-series-approximated p-values (See also https://zenodo.org/records/12734778).