A genome-scale metabolic model for the denitrifying bacterium Thauera sp. MZ1T accurately predicts degradation of pollutants and production of polymers
Fig 5
Reaction essentiality analysis for the production of PHB and EPSs under aerobic and anaerobic conditions using different carbon sources.
A Upset plot with 20 distinct groups of lethal reactions for PHB and six EPSs under aerobic conditions. Pie charts of the reaction subsystem distribution above each bar from the lethal reaction groups. B Upset plot with 19 diverse groups of lethal reactions for PHB and six EPSs under anaerobic conditions. Pie charts of the reaction subsystem distribution above each bar from the lethal reaction groups. C Percentage distribution of enzyme classification of lethal genes estimated through single gene deletion under aerobic condition (outer plot) and the C sources affected by the lethal reactions (inner plot). D Percentage distribution of the enzyme classification of the lethal genes estimated through single gene deletion under anaerobic condition (outer plot) and the C sources affected by the lethal reactions (inner plot).