Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
Fig 4
MMscore vs confidence for all 7 complexes using 100 iterations per complex (n = 700) from the CASP15 set.
The learning rate (lr) is increasing row-wise and the number of recycles column-wise. The Spearman correlations (R) are displayed in the figure legend. Some correlations are negative. The best correlation (0.68) is obtained by using lr = 0.0001 and 0 recycles.