Logistic PCA explains differences between genome-scale metabolic models in terms of metabolic pathways
Fig 7
LPCA (a), t-SNE (b) and Jaccard coefficients (c) derived from a binary reaction matrix from 2943 Firmicutes species-GSMMs.
In panels (a) and (b), points represent individual GSMMs, with different genera indicated by distinct symbols and colors. The top row in panel (c) uses these same colors to indicate the corresponding genera. The clustering of rows and columns in panel (c) was performed using the default hierarchical clustering settings (refer to methods section for details).