A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization
Fig 5
t-SNE visualizations of the original and batch-effect corrected data for the AML dataset.
The t-SNE is computed for the original data (top row) or AIF’s batch-effect-corrected data (bottom row) using a prior PCA. The cells are colored by batch label (left), cell type label (middle), or major cell type label (right).