Transcript assembly and annotations: Bias and adjustment
Fig 8
A toy example for illustrating the Jaccard similarity of two annotations T1 and T2 at the level of boundary, junction, and intron-chain.
Genes and transcripts from the same annotation are colored the same. Identical boundaries between two annotations are marked with vertical dashed lines. We have JB(T1, T2) ≔ |B(T1) ∩ B(T2)|/|B(T1) ∪ B(T2) = 5/6|, JJ(T1, T2) ≔ |J(T1) ∩ J(T2)|/|J(T1) ∪ J(T2)| = 5/8|, and JC(T1, T2) ≔ |C(T1) ∩ C(T2)|/|C(T1) ∪ C(T2)| = 1/3|.