Transcript assembly and annotations: Bias and adjustment
Fig 5
Comparison of the matching transcripts assembled by StringTie2 and Scallop2 in the five largest biotypes using the Ensembl annotation as the reference.
The average number over all samples in each dataset is reported in the barplot. The 5 biotypes are: protein_coding (pc), retained_intron (ir), lncRNA (lnc), processed_transcript (pt), and nonsense_mediated_decay (nmd). These five biotypes account for 98.6% of the total transcripts in Ensembl.