Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation
Fig 9
Clusters and architectures identified by seqArchR for 30% Epiboly/Dome stage.
Sequence clusters arranged by the median IQW of CAGE TCs in seqArchR clusters (shortest on top, broadest at the bottom). Each panel, from left to right: Box and whisker plots of per-cluster IQWs, and TPMs followed by per-cluster sequence logos, and stacked barplots showing proportion of different genomic annotations. TPM, Tags per million.