Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation
Fig 8
Clusters and architectures identified by seqArchR for 64 cells stage.
Sequence clusters arranged by the median interquantile widths (IQW) of CAGE TCs in seqArchR clusters (shortest on top, broadest at the bottom). Each panel, from left to right: Box and whisker plots of per-cluster IQWs, and TPMs followed by per-cluster sequence logos, and stacked barplots showing proportion of different genomic annotations. TPM, Tags per million.