HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph
Fig 3
Downsampling experiment on simulated paired-end FASTQ data with added NuMT reads at a rate of one in two hundred.
Distribution of log Levenshtein (edit) distances between ground truth and predicted haplogroups on simulated paired-end reads with added simulated NuMT reads at a frequency of one in two hundred. Central lines represent the arithmetic means of the distributions and are considerably lower for HaploCart over all windows compared to HaploGrep2 and HaploGrouper.