Latent Dirichlet Allocation modeling of environmental microbiomes
Fig 8
Difference in abundances of ASVs in the half-water treatment relative to the full-water (dashed middle line).
Dots represent the differential abundance coefficient and the error bars are standard errors. The taxa shown are only those that are significant after a p-value correction with the FDR set to 0.05. Plots were produced using corncob R package [50]. The dots colored in red show taxa that were abundant in half-water related LDA topics. The dots colored in blue show taxa that were abundant in full water related LDA topics. Note that the comparison was made with the Fig 7 where only ASVs with p > 0.025 are shown. The second half of the plot with other significant taxa is shown in S12 Fig.