Latent Dirichlet Allocation modeling of environmental microbiomes
Fig 7
Distribution of ASVs in each learned LDA topic.
Topics to the left of topic 10 are associated with half-water treatment, and topics to the right of topic 15 are associated with full-water treatment. The labels are written in the phylum_class_order_family_genus_species format, the names of genera, species, and ASV are not shown. Only probabilities (color circles) greater than 0.025 are shown. The sizes of the circles representing probabilities are multiplied by 4 for visualization purposes. Smaller circles are displayed on the top of larger circles.