Latent Dirichlet Allocation modeling of environmental microbiomes
Fig 5
Distribution of ASV sequences in each learned LDA topic.
Topics to the left of topic 9 are strongly associated with Acropora cervicornis species, and topics to the right of topic 8 are strongly associated with Acropora palmata species. The labels are written in the phylum_class_order_family format, the names of genera, species, and ASVs are not shown. Only probabilities (color circles) greater than 0.1 are shown. Smaller circles are displayed on the top of larger circles.